186 related articles for article (PubMed ID: 38717471)
1. SNP-SVant: A Computational Workflow to Predict and Annotate Genomic Variants in Organisms Lacking Benchmarked Variants.
Gunasekaran D; Ardell DH; Nobile CJ
Curr Protoc; 2024 May; 4(5):e1046. PubMed ID: 38717471
[TBL] [Abstract][Full Text] [Related]
2. A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset.
Zhou Y; Kathiresan N; Yu Z; Rivera LF; Yang Y; Thimma M; Manickam K; Chebotarov D; Mauleon R; Chougule K; Wei S; Gao T; Green CD; Zuccolo A; Xie W; Ware D; Zhang J; McNally KL; Wing RA
BMC Biol; 2024 Jan; 22(1):13. PubMed ID: 38273258
[TBL] [Abstract][Full Text] [Related]
3. RIG: Recalibration and interrelation of genomic sequence data with the GATK.
McCormick RF; Truong SK; Mullet JE
G3 (Bethesda); 2015 Feb; 5(4):655-65. PubMed ID: 25681258
[TBL] [Abstract][Full Text] [Related]
4. OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow.
Bathke J; Lühken G
BMC Bioinformatics; 2021 Aug; 22(1):402. PubMed ID: 34388963
[TBL] [Abstract][Full Text] [Related]
5. An optimized genomic VCF workflow for precise identification of Mycobacterium tuberculosis cluster from cross-platform whole genome sequencing data.
Disratthakit A; Toyo-Oka L; Thawong P; Paiboonsiri P; Wichukjinda N; Ajawatanawong P; Thipkrua N; Suthum K; Palittapongarnpim P; Tokunaga K; Mahasirimongkol S
Infect Genet Evol; 2020 Apr; 79():104152. PubMed ID: 31881359
[TBL] [Abstract][Full Text] [Related]
6. JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.
Ahmed Z; Renart EG; Mishra D; Zeeshan S
FEBS Open Bio; 2021 Sep; 11(9):2441-2452. PubMed ID: 34370400
[TBL] [Abstract][Full Text] [Related]
7. nanotatoR: a tool for enhanced annotation of genomic structural variants.
Bhattacharya S; Barseghyan H; Délot EC; Vilain E
BMC Genomics; 2021 Jan; 22(1):10. PubMed ID: 33407088
[TBL] [Abstract][Full Text] [Related]
8. An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.
Ribeiro A; Golicz A; Hackett CA; Milne I; Stephen G; Marshall D; Flavell AJ; Bayer M
BMC Bioinformatics; 2015 Nov; 16():382. PubMed ID: 26558718
[TBL] [Abstract][Full Text] [Related]
9. A community-based resource for automatic exome variant-calling and annotation in Mendelian disorders.
Mutarelli M; Marwah V; Rispoli R; Carrella D; Dharmalingam G; Oliva G; di Bernardo D
BMC Genomics; 2014; 15 Suppl 3(Suppl 3):S5. PubMed ID: 25078076
[TBL] [Abstract][Full Text] [Related]
10. Impact of post-alignment processing in variant discovery from whole exome data.
Tian S; Yan H; Kalmbach M; Slager SL
BMC Bioinformatics; 2016 Oct; 17(1):403. PubMed ID: 27716037
[TBL] [Abstract][Full Text] [Related]
11. svclassify: a method to establish benchmark structural variant calls.
Parikh H; Mohiyuddin M; Lam HY; Iyer H; Chen D; Pratt M; Bartha G; Spies N; Losert W; Zook JM; Salit M
BMC Genomics; 2016 Jan; 17():64. PubMed ID: 26772178
[TBL] [Abstract][Full Text] [Related]
12.
Seah YM; Stewart MK; Hoogestraat D; Ryder M; Cookson BT; Salipante SJ; Hoffman NG
J Clin Microbiol; 2023 Aug; 61(8):e0184222. PubMed ID: 37428072
[TBL] [Abstract][Full Text] [Related]
13. Aquila enables reference-assisted diploid personal genome assembly and comprehensive variant detection based on linked reads.
Zhou X; Zhang L; Weng Z; Dill DL; Sidow A
Nat Commun; 2021 Feb; 12(1):1077. PubMed ID: 33597536
[TBL] [Abstract][Full Text] [Related]
14. An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data.
Azam S; Rathore A; Shah TM; Telluri M; Amindala B; Ruperao P; Katta MA; Varshney RK
PLoS One; 2014; 9(7):e101754. PubMed ID: 25003610
[TBL] [Abstract][Full Text] [Related]
15. A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy.
Wickland DP; Battu G; Hudson KA; Diers BW; Hudson ME
BMC Bioinformatics; 2017 Dec; 18(1):586. PubMed ID: 29281959
[TBL] [Abstract][Full Text] [Related]
16. Detailed comparison of two popular variant calling packages for exome and targeted exon studies.
Warden CD; Adamson AW; Neuhausen SL; Wu X
PeerJ; 2014; 2():e600. PubMed ID: 25289185
[TBL] [Abstract][Full Text] [Related]
17. Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.
Roberts HE; Lopopolo M; Pagnamenta AT; Sharma E; Parkes D; Lonie L; Freeman C; Knight SJL; Lunter G; Dreau H; Lockstone H; Taylor JC; Schuh A; Bowden R; Buck D
Sci Rep; 2021 Mar; 11(1):6408. PubMed ID: 33742045
[TBL] [Abstract][Full Text] [Related]
18. Kuura-An automated workflow for analyzing WES and WGS data.
Jambulingam D; Rathinakannan VS; Heron S; Schleutker J; Fey V
PLoS One; 2024; 19(1):e0296785. PubMed ID: 38236904
[TBL] [Abstract][Full Text] [Related]
19. PEMapper and PECaller provide a simplified approach to whole-genome sequencing.
Johnston HR; Chopra P; Wingo TS; Patel V; ; Epstein MP; Mulle JG; Warren ST; Zwick ME; Cutler DJ
Proc Natl Acad Sci U S A; 2017 Mar; 114(10):E1923-E1932. PubMed ID: 28223510
[TBL] [Abstract][Full Text] [Related]
20. Analysis of Genetic Ancestry from NGS Data Using EthSEQ.
Dalfovo D; Romanel A
Curr Protoc; 2023 Feb; 3(2):e663. PubMed ID: 36779822
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
