These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Effects of supercoiling in electrophoretic trapping of circular DNA in polyacrylamide gels. Akerman B Biophys J; 1998 Jun; 74(6):3140-51. PubMed ID: 9635767 [TBL] [Abstract][Full Text] [Related]
4. Sedimentation and electrophoretic migration of DNA knots and catenanes. Vologodskii AV; Crisona NJ; Laurie B; Pieranski P; Katritch V; Dubochet J; Stasiak A J Mol Biol; 1998 Apr; 278(1):1-3. PubMed ID: 9571029 [TBL] [Abstract][Full Text] [Related]
5. Two-Dimensional Gel Electrophoresis to Resolve DNA Topoisomers. Gibson EG; Oviatt AA; Osheroff N Methods Mol Biol; 2020; 2119():15-24. PubMed ID: 31989511 [TBL] [Abstract][Full Text] [Related]
6. DNA Catenation Reveals the Dynamics of DNA Topology During Replication. Castán A; Hernández P; Krimer DB; Schvartzman JB Methods Mol Biol; 2018; 1703():75-86. PubMed ID: 29177734 [TBL] [Abstract][Full Text] [Related]
7. Two-dimensional agarose gel electrophoresis of DNA topoisomers. Roca J Methods Mol Biol; 2009; 582():27-37. PubMed ID: 19763939 [TBL] [Abstract][Full Text] [Related]
8. Using Two-Dimensional Intact Mitochondrial DNA (mtDNA) Agarose Gel Electrophoresis (2D-IMAGE) to Detect Changes in Topology Associated with Mitochondrial Replication, Transcription, and Damage. Kolesar JE; Kaufman BA Methods Mol Biol; 2020; 2119():25-42. PubMed ID: 31989512 [TBL] [Abstract][Full Text] [Related]
9. Analysis of DNA topoisomers, knots, and catenanes by agarose gel electrophoresis. Levene SD Methods Mol Biol; 2009; 582():11-25. PubMed ID: 19763938 [TBL] [Abstract][Full Text] [Related]
10. Capillary electrophoresis of supercoiled DNA molecules: parameters governing the resolution of topoisomers and their separation from open forms. Raucci G; Maggi CA; Parente D Anal Chem; 2000 Feb; 72(4):821-6. PubMed ID: 10701268 [TBL] [Abstract][Full Text] [Related]
11. Molecular Dynamics Simulation of Supercoiled, Knotted, and Catenated DNA Molecules, Including Modeling of Action of DNA Gyrase. Racko D; Benedetti F; Dorier J; Burnier Y; Stasiak A Methods Mol Biol; 2017; 1624():339-372. PubMed ID: 28842894 [TBL] [Abstract][Full Text] [Related]
12. The electrophoretic properties of a DNA cube and its substructure catenanes. Chen JH; Seeman NC Electrophoresis; 1991 Sep; 12(9):607-11. PubMed ID: 1752239 [TBL] [Abstract][Full Text] [Related]
13. How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation. Rawdon EJ; Dorier J; Racko D; Millett KC; Stasiak A Nucleic Acids Res; 2016 Jun; 44(10):4528-38. PubMed ID: 27106058 [TBL] [Abstract][Full Text] [Related]
14. Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication. López V; Martínez-Robles ML; Hernández P; Krimer DB; Schvartzman JB Nucleic Acids Res; 2012 Apr; 40(8):3563-73. PubMed ID: 22187153 [TBL] [Abstract][Full Text] [Related]
15. Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes. Schvartzman JB; Hernández P; Krimer DB; Dorier J; Stasiak A Nucleic Acids Res; 2019 Aug; 47(14):7182-7198. PubMed ID: 31276584 [TBL] [Abstract][Full Text] [Related]
16. Electrophoresis of DNA in oriented agarose gels. Holmes DL; Stellwagen NC J Biomol Struct Dyn; 1989 Oct; 7(2):311-27. PubMed ID: 2604908 [TBL] [Abstract][Full Text] [Related]
17. Construction and electrophoretic migration of single-stranded DNA knots and catenanes. Bucka A; Stasiak A Nucleic Acids Res; 2002 Mar; 30(6):e24. PubMed ID: 11884643 [TBL] [Abstract][Full Text] [Related]
18. Plasmid DNA topology assayed by two-dimensional agarose gel electrophoresis. Schvartzman JB; Martínez-Robles ML; Hernández P; Krimer DB Methods Mol Biol; 2013; 1054():121-32. PubMed ID: 23913288 [TBL] [Abstract][Full Text] [Related]
19. Interplay of DNA supercoiling and catenation during the segregation of sister duplexes. Martínez-Robles ML; Witz G; Hernández P; Schvartzman JB; Stasiak A; Krimer DB Nucleic Acids Res; 2009 Aug; 37(15):5126-37. PubMed ID: 19553196 [TBL] [Abstract][Full Text] [Related]