BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

139 related articles for article (PubMed ID: 38741151)

  • 1. Bayesian modelling of time series data (BayModTS)-a FAIR workflow to process sparse and highly variable data.
    Höpfl S; Albadry M; Dahmen U; Herrmann KH; Kindler EM; König M; Reichenbach JR; Tautenhahn HM; Wei W; Zhao WT; Radde NE
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38741151
    [TBL] [Abstract][Full Text] [Related]  

  • 2. FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.
    Wolstencroft K; Krebs O; Snoep JL; Stanford NJ; Bacall F; Golebiewski M; Kuzyakiv R; Nguyen Q; Owen S; Soiland-Reyes S; Straszewski J; van Niekerk DD; Williams AR; Malmström L; Rinn B; Müller W; Goble C
    Nucleic Acids Res; 2017 Jan; 45(D1):D404-D407. PubMed ID: 27899646
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Technical Note: Ontology-guided radiomics analysis workflow (O-RAW).
    Shi Z; Traverso A; van Soest J; Dekker A; Wee L
    Med Phys; 2019 Dec; 46(12):5677-5684. PubMed ID: 31580484
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GlyGen data model and processing workflow.
    Kahsay R; Vora J; Navelkar R; Mousavi R; Fochtman BC; Holmes X; Pattabiraman N; Ranzinger R; Mahadik R; Williamson T; Kulkarni S; Agarwal G; Martin M; Vasudev P; Garcia L; Edwards N; Zhang W; Natale DA; Ross K; Aoki-Kinoshita KF; Campbell MP; York WS; Mazumder R
    Bioinformatics; 2020 Jun; 36(12):3941-3943. PubMed ID: 32324859
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SBML2HYB: a Python interface for SBML compatible hybrid modeling.
    Pinto J; Costa RS; Alexandre L; Ramos J; Oliveira R
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36661327
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ABC-SysBio--approximate Bayesian computation in Python with GPU support.
    Liepe J; Barnes C; Cule E; Erguler K; Kirk P; Toni T; Stumpf MP
    Bioinformatics; 2010 Jul; 26(14):1797-9. PubMed ID: 20591907
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI.
    Sütterlin T; Kolb C; Dickhaus H; Jäger D; Grabe N
    Bioinformatics; 2013 Jan; 29(2):223-9. PubMed ID: 23162085
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Simulation Foundry: Automated and F.A.I.R. Molecular Modeling.
    Gygli G; Pleiss J
    J Chem Inf Model; 2020 Apr; 60(4):1922-1927. PubMed ID: 32240586
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FAIR-compliant clinical, radiomics and DICOM metadata of RIDER, interobserver, Lung1 and head-Neck1 TCIA collections.
    Kalendralis P; Shi Z; Traverso A; Choudhury A; Sloep M; Zhovannik I; Starmans MPA; Grittner D; Feltens P; Monshouwer R; Klein S; Fijten R; Aerts H; Dekker A; van Soest J; Wee L
    Med Phys; 2020 Nov; 47(11):5931-5940. PubMed ID: 32521049
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PEITH(Θ): perfecting experiments with information theory in Python with GPU support.
    Dony L; Mackerodt J; Ward S; Filippi S; Stumpf MPH; Liepe J
    Bioinformatics; 2018 Apr; 34(7):1249-1250. PubMed ID: 29228182
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Computational Workflow for the Automated Generation of Models of Genetic Designs.
    Misirli G; Nguyen T; McLaughlin JA; Vaidyanathan P; Jones TS; Densmore D; Myers C; Wipat A
    ACS Synth Biol; 2019 Jul; 8(7):1548-1559. PubMed ID: 29782151
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bayesian inference using qualitative observations of underlying continuous variables.
    Mitra ED; Hlavacek WS
    Bioinformatics; 2020 May; 36(10):3177-3184. PubMed ID: 32049328
    [TBL] [Abstract][Full Text] [Related]  

  • 13. compMS2Miner: An Automatable Metabolite Identification, Visualization, and Data-Sharing R Package for High-Resolution LC-MS Data Sets.
    Edmands WM; Petrick L; Barupal DK; Scalbert A; Wilson MJ; Wickliffe JK; Rappaport SM
    Anal Chem; 2017 Apr; 89(7):3919-3928. PubMed ID: 28225587
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ORT: a workflow linking genome-scale metabolic models with reactive transport codes.
    Rubinstein RL; Borton MA; Zhou H; Shaffer M; Hoyt DW; Stegen J; Henry CS; Wrighton KC; Versteeg R
    Bioinformatics; 2022 Jan; 38(3):778-784. PubMed ID: 34726691
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models.
    Bois FY
    Bioinformatics; 2009 Jun; 25(11):1453-4. PubMed ID: 19304877
    [TBL] [Abstract][Full Text] [Related]  

  • 16. libRoadRunner: a high performance SBML simulation and analysis library.
    Somogyi ET; Bouteiller JM; Glazier JA; König M; Medley JK; Swat MH; Sauro HM
    Bioinformatics; 2015 Oct; 31(20):3315-21. PubMed ID: 26085503
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BELMM: Bayesian model selection and random walk smoothing in time-series clustering.
    Sarala O; Pyhäjärvi T; Sillanpää MJ
    Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37963057
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Bayesian parameter estimation for nonlinear modelling of biological pathways.
    Ghasemi O; Lindsey ML; Yang T; Nguyen N; Huang Y; Jin YF
    BMC Syst Biol; 2011; 5 Suppl 3(Suppl 3):S9. PubMed ID: 22784628
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bioinformatics tools developed to support BioCompute Objects.
    Patel JA; Dean DA; King CH; Xiao N; Koc S; Minina E; Golikov A; Brooks P; Kahsay R; Navelkar R; Ray M; Roberson D; Armstrong C; Mazumder R; Keeney J
    Database (Oxford); 2021 Mar; 2021():. PubMed ID: 33784373
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 7.