These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

211 related articles for article (PubMed ID: 38745991)

  • 1. State-of-the-RNArt: benchmarking current methods for RNA 3D structure prediction.
    Bernard C; Postic G; Ghannay S; Tahi F
    NAR Genom Bioinform; 2024 Jun; 6(2):lqae048. PubMed ID: 38745991
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNAdvisor: a comprehensive benchmarking tool for the measure and prediction of RNA structural model quality.
    Bernard C; Postic G; Ghannay S; Tahi F
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38436560
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNANet: an automatically built dual-source dataset integrating homologous sequences and RNA structures.
    Becquey L; Angel E; Tahi F
    Bioinformatics; 2021 Jun; 37(9):1218-1224. PubMed ID: 33135044
    [TBL] [Abstract][Full Text] [Related]  

  • 4. C-RCPred: a multi-objective algorithm for interactive secondary structure prediction of RNA complexes integrating user knowledge and SHAPE data.
    Ibéné M; Legendre A; Postic G; Angel E; Tahi F
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37337745
    [TBL] [Abstract][Full Text] [Related]  

  • 5. IRSOM2: a web server for predicting bifunctional RNAs.
    Postic G; Tav C; Platon L; Zehraoui F; Tahi F
    Nucleic Acids Res; 2023 Jul; 51(W1):W281-W288. PubMed ID: 37158254
    [TBL] [Abstract][Full Text] [Related]  

  • 6. miRNAFold: a web server for fast miRNA precursor prediction in genomes.
    Tav C; Tempel S; Poligny L; Tahi F
    Nucleic Acids Res; 2016 Jul; 44(W1):W181-4. PubMed ID: 27242364
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Advances in RNA 3D Structure Prediction.
    Ou X; Zhang Y; Xiong Y; Xiao Y
    J Chem Inf Model; 2022 Dec; 62(23):5862-5874. PubMed ID: 36451090
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Bi-objective integer programming for RNA secondary structure prediction with pseudoknots.
    Legendre A; Angel E; Tahi F
    BMC Bioinformatics; 2018 Jan; 19(1):13. PubMed ID: 29334887
    [TBL] [Abstract][Full Text] [Related]  

  • 9. IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data.
    Boucheham A; Sommard V; Zehraoui F; Boualem A; Batouche M; Bendahmane A; Israeli D; Tahi F
    PLoS One; 2017; 12(6):e0179787. PubMed ID: 28622364
    [TBL] [Abstract][Full Text] [Related]  

  • 10. IRSOM, a reliable identifier of ncRNAs based on supervised self-organizing maps with rejection.
    Platon L; Zehraoui F; Bendahmane A; Tahi F
    Bioinformatics; 2018 Sep; 34(17):i620-i628. PubMed ID: 30423081
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools.
    Magnus M; Antczak M; Zok T; Wiedemann J; Lukasiak P; Cao Y; Bujnicki JM; Westhof E; Szachniuk M; Miao Z
    Nucleic Acids Res; 2020 Jan; 48(2):576-588. PubMed ID: 31799609
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNA 3D Structure Comparison Using RNA-Puzzles Toolkit.
    Magnus M; Miao Z
    Methods Mol Biol; 2023; 2586():263-285. PubMed ID: 36705910
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
    Walsh I; Baù D; Martin AJ; Mooney C; Vullo A; Pollastri G
    BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
    Miao Z; Adamiak RW; Antczak M; Batey RT; Becka AJ; Biesiada M; Boniecki MJ; Bujnicki JM; Chen SJ; Cheng CY; Chou FC; Ferré-D'Amaré AR; Das R; Dawson WK; Ding F; Dokholyan NV; Dunin-Horkawicz S; Geniesse C; Kappel K; Kladwang W; Krokhotin A; Łach GE; Major F; Mann TH; Magnus M; Pachulska-Wieczorek K; Patel DJ; Piccirilli JA; Popenda M; Purzycka KJ; Ren A; Rice GM; Santalucia J; Sarzynska J; Szachniuk M; Tandon A; Trausch JJ; Tian S; Wang J; Weeks KM; Williams B; Xiao Y; Xu X; Zhang D; Zok T; Westhof E
    RNA; 2017 May; 23(5):655-672. PubMed ID: 28138060
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A fast ab-initio method for predicting miRNA precursors in genomes.
    Tempel S; Tahi F
    Nucleic Acids Res; 2012 Jun; 40(11):e80. PubMed ID: 22362754
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Towards a piRNA prediction using multiple kernel fusion and support vector machine.
    Brayet J; Zehraoui F; Jeanson-Leh L; Israeli D; Tahi F
    Bioinformatics; 2014 Sep; 30(17):i364-70. PubMed ID: 25161221
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNA 3D structure prediction guided by independent folding of homologous sequences.
    Magnus M; Kappel K; Das R; Bujnicki JM
    BMC Bioinformatics; 2019 Oct; 20(1):512. PubMed ID: 31640563
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DNSS2: Improved ab initio protein secondary structure prediction using advanced deep learning architectures.
    Guo Z; Hou J; Cheng J
    Proteins; 2021 Feb; 89(2):207-217. PubMed ID: 32893403
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure prediction.
    Li Y; Zhang C; Feng C; Pearce R; Lydia Freddolino P; Zhang Y
    Nat Commun; 2023 Sep; 14(1):5745. PubMed ID: 37717036
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integrating ab initio and template-based algorithms for protein-protein complex structure prediction.
    Vangaveti S; Vreven T; Zhang Y; Weng Z
    Bioinformatics; 2020 Feb; 36(3):751-757. PubMed ID: 31393558
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.