These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
197 related articles for article (PubMed ID: 38748485)
1. Application and Comparison of Machine Learning and Database-Based Methods in Taxonomic Classification of High-Throughput Sequencing Data. Tian Q; Zhang P; Zhai Y; Wang Y; Zou Q Genome Biol Evol; 2024 May; 16(5):. PubMed ID: 38748485 [TBL] [Abstract][Full Text] [Related]
2. Correcting the Estimation of Viral Taxa Distributions in Next-Generation Sequencing Data after Applying Artificial Neural Networks. Kohls M; Kircher M; Krepel J; Liebig P; Jung K Genes (Basel); 2021 Oct; 12(11):. PubMed ID: 34828361 [TBL] [Abstract][Full Text] [Related]
3. MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes. Peres da Silva R; Suphavilai C; Nagarajan N BMC Bioinformatics; 2024 Apr; 25(Suppl 1):153. PubMed ID: 38627615 [TBL] [Abstract][Full Text] [Related]
5. Large-scale machine learning for metagenomics sequence classification. Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281 [TBL] [Abstract][Full Text] [Related]
6. Mycofier: a new machine learning-based classifier for fungal ITS sequences. Delgado-Serrano L; Restrepo S; Bustos JR; Zambrano MM; Anzola JM BMC Res Notes; 2016 Aug; 9(1):402. PubMed ID: 27516337 [TBL] [Abstract][Full Text] [Related]
7. Machine learning random forest for predicting oncosomatic variant NGS analysis. Pellegrino E; Jacques C; Beaufils N; Nanni I; Carlioz A; Metellus P; Ouafik L Sci Rep; 2021 Nov; 11(1):21820. PubMed ID: 34750410 [TBL] [Abstract][Full Text] [Related]
8. Cataloguing the taxonomic origins of sequences from a heterogeneous sample using phylogenomics: applications in adventitious agent detection. Charlebois RL; Ng SH; Gisonni-Lex L; Mallet L PDA J Pharm Sci Technol; 2014; 68(6):602-18. PubMed ID: 25475635 [TBL] [Abstract][Full Text] [Related]
9. DCMD: Distance-based classification using mixture distributions on microbiome data. Shestopaloff K; Dong M; Gao F; Xu W PLoS Comput Biol; 2021 Mar; 17(3):e1008799. PubMed ID: 33711013 [TBL] [Abstract][Full Text] [Related]
10. Scalable metagenomic taxonomy classification using a reference genome database. Ames SK; Hysom DA; Gardner SN; Lloyd GS; Gokhale MB; Allen JE Bioinformatics; 2013 Sep; 29(18):2253-60. PubMed ID: 23828782 [TBL] [Abstract][Full Text] [Related]
11. Investigation of machine learning algorithms for taxonomic classification of marine metagenomes. Park H; Lim SJ; Cosme J; O'Connell K; Sandeep J; Gayanilo F; Cutter GR; Montes E; Nitikitpaiboon C; Fisher S; Moustahfid H; Thompson LR Microbiol Spectr; 2023 Oct; 11(5):e0523722. PubMed ID: 37695074 [TBL] [Abstract][Full Text] [Related]
12. BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities. Daisley BA; Reid G mSystems; 2021 Apr; 6(2):. PubMed ID: 33824193 [TBL] [Abstract][Full Text] [Related]
13. OTUX: V-region specific OTU database for improved 16S rRNA OTU picking and efficient cross-study taxonomic comparison of microbiomes. Yadav D; Dutta A; Mande SS DNA Res; 2019 Apr; 26(2):147-156. PubMed ID: 30624596 [TBL] [Abstract][Full Text] [Related]
14. Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes. Liu KL; Porras-Alfaro A; Kuske CR; Eichorst SA; Xie G Appl Environ Microbiol; 2012 Mar; 78(5):1523-33. PubMed ID: 22194300 [TBL] [Abstract][Full Text] [Related]
15. RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes. Chen G; Jiang J; Sun Y Gigascience; 2024 Jan; 13():. PubMed ID: 39172545 [TBL] [Abstract][Full Text] [Related]
16. seqQscorer: automated quality control of next-generation sequencing data using machine learning. Albrecht S; Sprang M; Andrade-Navarro MA; Fontaine JF Genome Biol; 2021 Mar; 22(1):75. PubMed ID: 33673854 [TBL] [Abstract][Full Text] [Related]
17. RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets. Scheuch M; Höper D; Beer M BMC Bioinformatics; 2015 Mar; 16(1):69. PubMed ID: 25886935 [TBL] [Abstract][Full Text] [Related]
19. 16S classifier: a tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets. Chaudhary N; Sharma AK; Agarwal P; Gupta A; Sharma VK PLoS One; 2015; 10(2):e0116106. PubMed ID: 25646627 [TBL] [Abstract][Full Text] [Related]
20. SNooPer: a machine learning-based method for somatic variant identification from low-pass next-generation sequencing. Spinella JF; Mehanna P; Vidal R; Saillour V; Cassart P; Richer C; Ouimet M; Healy J; Sinnett D BMC Genomics; 2016 Nov; 17(1):912. PubMed ID: 27842494 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]