These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

344 related articles for article (PubMed ID: 38765606)

  • 1. Visualizing metagenomic and metatranscriptomic data: A comprehensive review.
    Aplakidou E; Vergoulidis N; Chasapi M; Venetsianou NK; Kokoli M; Panagiotopoulou E; Iliopoulos I; Karatzas E; Pafilis E; Georgakopoulos-Soares I; Kyrpides NC; Pavlopoulos GA; Baltoumas FA
    Comput Struct Biotechnol J; 2024 Dec; 23():2011-2033. PubMed ID: 38765606
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Metagenomics and metatranscriptomics as potential driving forces for the exploration of diversity and functions of micro-eukaryotes in soil.
    Yadav BNS; Sharma P; Maurya S; Yadav RK
    3 Biotech; 2023 Dec; 13(12):423. PubMed ID: 38047037
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil.
    Mauchline TH; Hayat R; Clark IM; Hirsch PR
    Lett Appl Microbiol; 2018 Jan; 66(1):14-18. PubMed ID: 29117429
    [TBL] [Abstract][Full Text] [Related]  

  • 4. UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets.
    Sequeira JC; Rocha M; Alves MM; Salvador AF
    Comput Struct Biotechnol J; 2022; 20():1798-1810. PubMed ID: 35495109
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Anvi'o: an advanced analysis and visualization platform for 'omics data.
    Eren AM; Esen ÖC; Quince C; Vineis JH; Morrison HG; Sogin ML; Delmont TO
    PeerJ; 2015; 3():e1319. PubMed ID: 26500826
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DiTing: A Pipeline to Infer and Compare Biogeochemical Pathways From Metagenomic and Metatranscriptomic Data.
    Xue CX; Lin H; Zhu XY; Liu J; Zhang Y; Rowley G; Todd JD; Li M; Zhang XH
    Front Microbiol; 2021; 12():698286. PubMed ID: 34408730
    [TBL] [Abstract][Full Text] [Related]  

  • 7. WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data.
    Devlin JC; Battaglia T; Blaser MJ; Ruggles KV
    BMC Genomics; 2018 Jun; 19(1):493. PubMed ID: 29940835
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Metagenomic and metatranscriptomic exploration of the Egyptian Red Sea sponge Theonella sp. associated microbial community.
    El Samak M; Zakeer S; Hanora A; Solyman SM
    Mar Genomics; 2023 Aug; 70():101032. PubMed ID: 37084583
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Bioinformatic approaches for studying the microbiome of fermented food.
    Walsh LH; Coakley M; Walsh AM; O'Toole PW; Cotter PD
    Crit Rev Microbiol; 2023 Nov; 49(6):693-725. PubMed ID: 36287644
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Next-Generation Metagenomics: Methodological Challenges and Opportunities.
    Laudadio I; Fulci V; Stronati L; Carissimi C
    OMICS; 2019 Jul; 23(7):327-333. PubMed ID: 31188063
    [TBL] [Abstract][Full Text] [Related]  

  • 12. AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite.
    Skoufos G; Almodaresi F; Zakeri M; Paulson JN; Patro R; Hatzigeorgiou AG; Vlachos IS
    Genome Biol; 2022 Jan; 23(1):39. PubMed ID: 35101114
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Integrative meta-omics in Galaxy and beyond.
    Schiml VC; Delogu F; Kumar P; Kunath B; Batut B; Mehta S; Johnson JE; Grüning B; Pope PB; Jagtap PD; Griffin TJ; Arntzen MØ
    Environ Microbiome; 2023 Jul; 18(1):56. PubMed ID: 37420292
    [TBL] [Abstract][Full Text] [Related]  

  • 14. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Integration of multi-omics data to elucidate keystone unknown taxa within microbialite-forming ecosystems.
    Amorín de Hegedüs R; Conesa A; Foster JS
    Front Microbiol; 2023; 14():1174685. PubMed ID: 37577445
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics.
    Vorobev A; Dupouy M; Carradec Q; Delmont TO; Annamalé A; Wincker P; Pelletier E
    Genome Res; 2020 Apr; 30(4):647-659. PubMed ID: 32205368
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
    Ugarte A; Vicedomini R; Bernardes J; Carbone A
    Microbiome; 2018 Aug; 6(1):149. PubMed ID: 30153857
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A comprehensive overview of microbiome data in the light of machine learning applications: categorization, accessibility, and future directions.
    Kumar B; Lorusso E; Fosso B; Pesole G
    Front Microbiol; 2024; 15():1343572. PubMed ID: 38419630
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Amino acid based de Bruijn graph algorithm for identifying complete coding genes from metagenomic and metatranscriptomic short reads.
    Liu J; Lian Q; Chen Y; Qi J
    Nucleic Acids Res; 2019 Mar; 47(5):e30. PubMed ID: 30657979
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics.
    Zhai P; Yang L; Guo X; Wang Z; Guo J; Wang X; Zhu H
    BMC Bioinformatics; 2017 Oct; 18(1):434. PubMed ID: 28969605
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.