BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 38780738)

  • 1. Assessing the Quality of Cotranscriptional Folding Simulations.
    Kühnl F; Stadler PF; Findeiß S
    Methods Mol Biol; 2024; 2726():347-376. PubMed ID: 38780738
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BarMap: RNA folding on dynamic energy landscapes.
    Hofacker IL; Flamm C; Heine C; Wolfinger MT; Scheuermann G; Stadler PF
    RNA; 2010 Jul; 16(7):1308-16. PubMed ID: 20504954
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Differences between cotranscriptional and free riboswitch folding.
    Lutz B; Faber M; Verma A; Klumpp S; Schug A
    Nucleic Acids Res; 2014 Feb; 42(4):2687-96. PubMed ID: 24275497
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Computational Methods for Modeling Aptamers and Designing Riboswitches.
    Gong S; Wang Y; Wang Z; Zhang W
    Int J Mol Sci; 2017 Nov; 18(11):. PubMed ID: 29149090
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Observation of coordinated RNA folding events by systematic cotranscriptional RNA structure probing.
    Szyjka CE; Strobel EJ
    Nat Commun; 2023 Nov; 14(1):7839. PubMed ID: 38030633
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Cotranscriptional folding of a riboswitch at nucleotide resolution.
    Watters KE; Strobel EJ; Yu AM; Lis JT; Lucks JB
    Nat Struct Mol Biol; 2016 Dec; 23(12):1124-1131. PubMed ID: 27798597
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Cotranscriptional Kinetic Folding of RNA Secondary Structures Including Pseudoknots.
    Thanh VH; Korpela D; Orponen P
    J Comput Biol; 2021 Sep; 28(9):892-908. PubMed ID: 33902324
    [No Abstract]   [Full Text] [Related]  

  • 8. The effect of pseudoknot base pairing on cotranscriptional structural switching of the fluoride riboswitch.
    Hertz LM; White EN; Kuznedelov K; Cheng L; Yu AM; Kakkaramadam R; Severinov K; Chen A; Lucks JB
    Nucleic Acids Res; 2024 May; 52(8):4466-4482. PubMed ID: 38567721
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches.
    Lin JC; Yoon J; Hyeon C; Thirumalai D
    Methods Enzymol; 2015; 553():235-58. PubMed ID: 25726468
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Predicting Cotranscriptional Folding Kinetics For Riboswitch.
    Sun TT; Zhao C; Chen SJ
    J Phys Chem B; 2018 Aug; 122(30):7484-7496. PubMed ID: 29985608
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Direct observation of cotranscriptional folding in an adenine riboswitch.
    Frieda KL; Block SM
    Science; 2012 Oct; 338(6105):397-400. PubMed ID: 23087247
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Cotranscriptional folding kinetics of ribonucleic acid secondary structures.
    Zhao P; Zhang W; Chen SJ
    J Chem Phys; 2011 Dec; 135(24):245101. PubMed ID: 22225186
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch.
    Cheng L; White EN; Brandt NL; Yu AM; Chen AA; Lucks JB
    Nucleic Acids Res; 2022 Nov; 50(21):12001-12018. PubMed ID: 35348734
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Real-time monitoring of single ZTP riboswitches reveals a complex and kinetically controlled decision landscape.
    Hua B; Jones CP; Mitra J; Murray PJ; Rosenthal R; Ferré-D'Amaré AR; Ha T
    Nat Commun; 2020 Sep; 11(1):4531. PubMed ID: 32913225
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding.
    Strobel EJ; Watters KE; Nedialkov Y; Artsimovitch I; Lucks JB
    Nucleic Acids Res; 2017 Jul; 45(12):e109. PubMed ID: 28398514
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model.
    Badelt S; Lorenz R; Hofacker IL
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36655786
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The dynamic nature of RNA as key to understanding riboswitch mechanisms.
    Haller A; Soulière MF; Micura R
    Acc Chem Res; 2011 Dec; 44(12):1339-48. PubMed ID: 21678902
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Co-Transcriptional Folding and Regulation Mechanisms of Riboswitches.
    Gong S; Wang Y; Wang Z; Zhang W
    Molecules; 2017 Jul; 22(7):. PubMed ID: 28703767
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Thermodynamic and kinetic folding of riboswitches.
    Badelt S; Hammer S; Flamm C; Hofacker IL
    Methods Enzymol; 2015; 553():193-213. PubMed ID: 25726466
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural Characterization of the Cotranscriptional Folding of the Thiamin Pyrophosphate Sensing
    Hien EDM; Chauvier A; St-Pierre P; Lafontaine DA
    Biochemistry; 2024 Jul; 63(13):1608-1620. PubMed ID: 38864595
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.