These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

139 related articles for article (PubMed ID: 38780739)

  • 21. Computationally Characterizing Protein-Bound Long Noncoding RNAs and Their Secondary Structure Using Protein Interaction Profile Sequencing (PIP-Seq) in Plants.
    Shan M; Anderson ZD; Gregory BD
    Methods Mol Biol; 2019; 1933():363-380. PubMed ID: 30945197
    [TBL] [Abstract][Full Text] [Related]  

  • 22. An algorithmic game-theory approach for coarse-grain prediction of RNA 3D structure.
    Lamiable A; Quessette F; Vial S; Barth D; Denise A
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(1):193-9. PubMed ID: 23702555
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Modeling and Predicting RNA Three-Dimensional Structures.
    Reinharz V; Sarrazin-Gendron R; Waldispühl J
    Methods Mol Biol; 2021; 2284():17-42. PubMed ID: 33835435
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Adventures with RNA graphs.
    Schlick T
    Methods; 2018 Jul; 143():16-33. PubMed ID: 29621619
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models.
    Stovgaard K; Andreetta C; Ferkinghoff-Borg J; Hamelryck T
    BMC Bioinformatics; 2010 Aug; 11():429. PubMed ID: 20718956
    [TBL] [Abstract][Full Text] [Related]  

  • 26. RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.
    Piatkowski P; Kasprzak JM; Kumar D; Magnus M; Chojnowski G; Bujnicki JM
    Methods Mol Biol; 2016; 1490():217-35. PubMed ID: 27665602
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Topological Structure Determination of RNA Using Small-Angle X-Ray Scattering.
    Bhandari YR; Fan L; Fang X; Zaki GF; Stahlberg EA; Jiang W; Schwieters CD; Stagno JR; Wang YX
    J Mol Biol; 2017 Nov; 429(23):3635-3649. PubMed ID: 28918093
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Predicting helical topologies in RNA junctions as tree graphs.
    Laing C; Jung S; Kim N; Elmetwaly S; Zahran M; Schlick T
    PLoS One; 2013; 8(8):e71947. PubMed ID: 23991010
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Computational modeling of RNA 3D structure based on experimental data.
    Ponce-Salvatierra A; Astha ; Merdas K; Nithin C; Ghosh P; Mukherjee S; Bujnicki JM
    Biosci Rep; 2019 Feb; 39(2):. PubMed ID: 30670629
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences.
    Hura GL; Hodge CD; Rosenberg D; Guzenko D; Duarte JM; Monastyrskyy B; Grudinin S; Kryshtafovych A; Tainer JA; Fidelis K; Tsutakawa SE
    Proteins; 2019 Dec; 87(12):1298-1314. PubMed ID: 31589784
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Structural Modeling Using Solution Small-Angle X-ray Scattering (SAXS).
    Gräwert TW; Svergun DI
    J Mol Biol; 2020 Apr; 432(9):3078-3092. PubMed ID: 32035901
    [TBL] [Abstract][Full Text] [Related]  

  • 32. SAXS studies of RNA: structures, dynamics, and interactions with partners.
    Chen Y; Pollack L
    Wiley Interdiscip Rev RNA; 2016 Jul; 7(4):512-26. PubMed ID: 27071649
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles.
    Bernetti M; Hall KB; Bussi G
    Nucleic Acids Res; 2021 Aug; 49(14):e84. PubMed ID: 34107023
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Practical Guidance in Genome-Wide RNA:DNA Triple Helix Prediction.
    Matveishina E; Antonov I; Medvedeva YA
    Int J Mol Sci; 2020 Jan; 21(3):. PubMed ID: 32012884
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Rapid global structure determination of large RNA and RNA complexes using NMR and small-angle X-ray scattering.
    Wang YX; Zuo X; Wang J; Yu P; Butcher SE
    Methods; 2010 Oct; 52(2):180-91. PubMed ID: 20554045
    [TBL] [Abstract][Full Text] [Related]  

  • 36. In Silico Prediction of RNA Secondary Structure.
    Tahi F; Du T Tran V; Boucheham A
    Methods Mol Biol; 2017; 1543():145-168. PubMed ID: 28349425
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Improving small-angle X-ray scattering data for structural analyses of the RNA world.
    Rambo RP; Tainer JA
    RNA; 2010 Mar; 16(3):638-46. PubMed ID: 20106957
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs.
    Doniach S; Lipfert J
    Methods Enzymol; 2009; 469():237-51. PubMed ID: 20946792
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Modeling and predicting RNA three-dimensional structures.
    Waldispühl J; Reinharz V
    Methods Mol Biol; 2015; 1269():101-21. PubMed ID: 25577374
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A pipeline for computational design of novel RNA-like topologies.
    Jain S; Laederach A; Ramos SBV; Schlick T
    Nucleic Acids Res; 2018 Aug; 46(14):7040-7051. PubMed ID: 30137633
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.