161 related articles for article (PubMed ID: 38783092)
1. Pan-cancer discovery of somatic mutations from RNA sequencing data.
Tang G; Liu X; Cho M; Li Y; Tran DH; Wang X
Commun Biol; 2024 May; 7(1):619. PubMed ID: 38783092
[TBL] [Abstract][Full Text] [Related]
2. PanClassif: Improving pan cancer classification of single cell RNA-seq gene expression data using machine learning.
Mahin KF; Robiuddin M; Islam M; Ashraf S; Yeasmin F; Shatabda S
Genomics; 2022 Mar; 114(2):110264. PubMed ID: 34998929
[TBL] [Abstract][Full Text] [Related]
3. OncoDB: an interactive online database for analysis of gene expression and viral infection in cancer.
Tang G; Cho M; Wang X
Nucleic Acids Res; 2022 Jan; 50(D1):D1334-D1339. PubMed ID: 34718715
[TBL] [Abstract][Full Text] [Related]
4. Pan-Cancer Single-Nucleus Total RNA Sequencing Using snHH-Seq.
Chen H; Fang X; Shao J; Zhang Q; Xu L; Chen J; Mei Y; Jiang M; Wang Y; Li Z; Chen Z; Chen Y; Yu C; Ma L; Zhang P; Zhang T; Liao Y; Lv Y; Wang X; Yang L; Fu Y; Chen D; Jiang L; Yan F; Lu W; Chen G; Shen H; Wang J; Wang C; Liang T; Han X; Wang Y; Guo G
Adv Sci (Weinh); 2024 Feb; 11(5):e2304755. PubMed ID: 38010945
[TBL] [Abstract][Full Text] [Related]
5. muTarget: A platform linking gene expression changes and mutation status in solid tumors.
Nagy Á; Győrffy B
Int J Cancer; 2021 Jan; 148(2):502-511. PubMed ID: 32875562
[TBL] [Abstract][Full Text] [Related]
6. Processing and Analysis of RNA-seq Data from Public Resources.
Zoabi Y; Shomron N
Methods Mol Biol; 2021; 2243():81-94. PubMed ID: 33606253
[TBL] [Abstract][Full Text] [Related]
7. Integrated RNA and DNA sequencing improves mutation detection in low purity tumors.
Wilkerson MD; Cabanski CR; Sun W; Hoadley KA; Walter V; Mose LE; Troester MA; Hammerman PS; Parker JS; Perou CM; Hayes DN
Nucleic Acids Res; 2014 Jul; 42(13):e107. PubMed ID: 24970867
[TBL] [Abstract][Full Text] [Related]
8. Pan-cancer integrative analysis of whole-genome De novo somatic point mutations reveals 17 cancer types.
Ghareyazi A; Kazemi A; Hamidieh K; Dashti H; Tahaei MS; Rabiee HR; Alinejad-Rokny H; Dehzangi I
BMC Bioinformatics; 2022 Jul; 23(1):298. PubMed ID: 35879674
[TBL] [Abstract][Full Text] [Related]
9. Targeted variant detection using unaligned RNA-Seq reads.
Audemard EO; Gendron P; Feghaly A; Lavallée VP; Hébert J; Sauvageau G; Lemieux S
Life Sci Alliance; 2019 Aug; 2(4):. PubMed ID: 31427380
[TBL] [Abstract][Full Text] [Related]
10. Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification.
Hafstað V; Häkkinen J; Larsson M; Staaf J; Vallon-Christersson J; Persson H
BMC Genomics; 2023 Dec; 24(1):783. PubMed ID: 38110872
[TBL] [Abstract][Full Text] [Related]
11. A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies.
Van R; Alvarez D; Mize T; Gannavarapu S; Chintham Reddy L; Nasoz F; Han MV
BMC Bioinformatics; 2024 May; 25(1):181. PubMed ID: 38720247
[TBL] [Abstract][Full Text] [Related]
12. Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS.
van Belzen IAEM; Cai C; van Tuil M; Badloe S; Strengman E; Janse A; Verwiel ETP; van der Leest DFM; Kester L; Molenaar JJ; Meijerink J; Drost J; Peng WC; Kerstens HHD; Tops BBJ; Holstege FCP; Kemmeren P; Hehir-Kwa JY
BMC Cancer; 2023 Jul; 23(1):618. PubMed ID: 37400763
[TBL] [Abstract][Full Text] [Related]
13. Detecting copy number alterations in RNA-Seq using SuperFreq.
Flensburg C; Oshlack A; Majewski IJ
Bioinformatics; 2021 Nov; 37(22):4023-4032. PubMed ID: 34132781
[TBL] [Abstract][Full Text] [Related]
14. RNAIndel: discovering somatic coding indels from tumor RNA-Seq data.
Hagiwara K; Ding L; Edmonson MN; Rice SV; Newman S; Easton J; Dai J; Meshinchi S; Ries RE; Rusch M; Zhang J
Bioinformatics; 2020 Mar; 36(5):1382-1390. PubMed ID: 31593214
[TBL] [Abstract][Full Text] [Related]
15. Discovery of clinically relevant fusions in pediatric cancer.
LaHaye S; Fitch JR; Voytovich KJ; Herman AC; Kelly BJ; Lammi GE; Arbesfeld JA; Wijeratne S; Franklin SJ; Schieffer KM; Bir N; McGrath SD; Miller AR; Wetzel A; Miller KE; Bedrosian TA; Leraas K; Varga EA; Lee K; Gupta A; Setty B; Boué DR; Leonard JR; Finlay JL; Abdelbaki MS; Osorio DS; Koo SC; Koboldt DC; Wagner AH; Eisfeld AK; Mrózek K; Magrini V; Cottrell CE; Mardis ER; Wilson RK; White P
BMC Genomics; 2021 Dec; 22(1):872. PubMed ID: 34863095
[TBL] [Abstract][Full Text] [Related]
16. A machine learning-based method for automatically identifying novel cells in annotating single-cell RNA-seq data.
Li Z; Wang Y; Ganan-Gomez I; Colla S; Do KA
Bioinformatics; 2022 Oct; 38(21):4885-4892. PubMed ID: 36083008
[TBL] [Abstract][Full Text] [Related]
17. CNApp, a tool for the quantification of copy number alterations and integrative analysis revealing clinical implications.
Franch-Expósito S; Bassaganyas L; Vila-Casadesús M; Hernández-Illán E; Esteban-Fabró R; Díaz-Gay M; Lozano JJ; Castells A; Llovet JM; Castellví-Bel S; Camps J
Elife; 2020 Jan; 9():. PubMed ID: 31939734
[TBL] [Abstract][Full Text] [Related]
18. Cell-level somatic mutation detection from single-cell RNA sequencing.
Vu TN; Nguyen HN; Calza S; Kalari KR; Wang L; Pawitan Y
Bioinformatics; 2019 Nov; 35(22):4679-4687. PubMed ID: 31028395
[TBL] [Abstract][Full Text] [Related]
19. A machine learning approach for somatic mutation discovery.
Wood DE; White JR; Georgiadis A; Van Emburgh B; Parpart-Li S; Mitchell J; Anagnostou V; Niknafs N; Karchin R; Papp E; McCord C; LoVerso P; Riley D; Diaz LA; Jones S; Sausen M; Velculescu VE; Angiuoli SV
Sci Transl Med; 2018 Sep; 10(457):. PubMed ID: 30185652
[TBL] [Abstract][Full Text] [Related]
20. Targeted deep sequencing of urothelial bladder cancers and associated urinary DNA: a 23-gene panel with utility for non-invasive diagnosis and risk stratification.
Ward DG; Gordon NS; Boucher RH; Pirrie SJ; Baxter L; Ott S; Silcock L; Whalley CM; Stockton JD; Beggs AD; Griffiths M; Abbotts B; Ijakipour H; Latheef FN; Robinson RA; White AJ; James ND; Zeegers MP; Cheng KK; Bryan RT
BJU Int; 2019 Sep; 124(3):532-544. PubMed ID: 31077629
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
