153 related articles for article (PubMed ID: 38793592)
1. Virus Quasispecies Rarefaction: Subsampling with or without Replacement?
Gregori J; Ibañez-Lligoña M; Colomer-Castell S; Campos C; Quer J
Viruses; 2024 Apr; 16(5):. PubMed ID: 38793592
[TBL] [Abstract][Full Text] [Related]
2. Applying next-generation sequencing to unravel the mutational landscape in viral quasispecies.
Lu IN; Muller CP; He FQ
Virus Res; 2020 Jul; 283():197963. PubMed ID: 32278821
[TBL] [Abstract][Full Text] [Related]
3. Recent advances in inferring viral diversity from high-throughput sequencing data.
Posada-Cespedes S; Seifert D; Beerenwinkel N
Virus Res; 2017 Jul; 239():17-32. PubMed ID: 27693290
[TBL] [Abstract][Full Text] [Related]
4. Genomic Diversity and Evolution of Quasispecies in Newcastle Disease Virus Infections.
Jadhav A; Zhao L; Liu W; Ding C; Nair V; Ramos-Onsins SE; Ferretti L
Viruses; 2020 Nov; 12(11):. PubMed ID: 33202558
[TBL] [Abstract][Full Text] [Related]
5. Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing.
Hora B; Gulzar N; Chen Y; Karagiannis K; Cai F; Su C; Smith K; Simonyan V; Shah SA; Ahmed M; Sanchez AM; Stone M; Cohen MS; Denny TN; Mazumder R; Gao F
mSphere; 2020 Oct; 5(5):. PubMed ID: 33055255
[TBL] [Abstract][Full Text] [Related]
6. Application of deep sequencing methods for inferring viral population diversity.
Huang SW; Hung SJ; Wang JR
J Virol Methods; 2019 Apr; 266():95-102. PubMed ID: 30690049
[TBL] [Abstract][Full Text] [Related]
7. Intra-Host Diversity of SARS-Cov-2 Should Not Be Neglected: Case of the State of Victoria, Australia.
Armero A; Berthet N; Avarre JC
Viruses; 2021 Jan; 13(1):. PubMed ID: 33477885
[TBL] [Abstract][Full Text] [Related]
8. Viral quasispecies assembly via maximal clique enumeration.
Töpfer A; Marschall T; Bull RA; Luciani F; Schönhuth A; Beerenwinkel N
PLoS Comput Biol; 2014 Mar; 10(3):e1003515. PubMed ID: 24675810
[TBL] [Abstract][Full Text] [Related]
9. Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing.
Prosperi MC; Prosperi L; Bruselles A; Abbate I; Rozera G; Vincenti D; Solmone MC; Capobianchi MR; Ulivi G
BMC Bioinformatics; 2011 Jan; 12():5. PubMed ID: 21208435
[TBL] [Abstract][Full Text] [Related]
10. Estimating Fitness of Viral Quasispecies from Next-Generation Sequencing Data.
Seifert D; Beerenwinkel N
Curr Top Microbiol Immunol; 2016; 392():181-200. PubMed ID: 26318139
[TBL] [Abstract][Full Text] [Related]
11. Characterization of hepatitis B virus X gene quasispecies complexity in mono-infection and hepatitis delta virus superinfection.
Godoy C; Tabernero D; Sopena S; Gregori J; Cortese MF; González C; Casillas R; Yll M; Rando A; López-Martínez R; Quer J; González-Aseguinolaza G; Esteban R; Riveiro-Barciela M; Buti M; Rodríguez-Frías F
World J Gastroenterol; 2019 Apr; 25(13):1566-1579. PubMed ID: 30983817
[TBL] [Abstract][Full Text] [Related]
12. Quasispecies Analysis of SARS-CoV-2 of 15 Different Lineages during the First Year of the Pandemic Prompts Scratching under the Surface of Consensus Genome Sequences.
Bader W; Delerce J; Aherfi S; La Scola B; Colson P
Int J Mol Sci; 2022 Dec; 23(24):. PubMed ID: 36555300
[TBL] [Abstract][Full Text] [Related]
13. A beginner's guide for FMDV quasispecies analysis: sub-consensus variant detection and haplotype reconstruction using next-generation sequencing.
Cacciabue M; Currá A; Carrillo E; König G; Gismondi MI
Brief Bioinform; 2020 Sep; 21(5):1766-1775. PubMed ID: 31697321
[TBL] [Abstract][Full Text] [Related]
14. De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding.
Chen J; Zhao Y; Sun Y
Bioinformatics; 2018 Sep; 34(17):2927-2935. PubMed ID: 29617936
[TBL] [Abstract][Full Text] [Related]
15. Viral quasispecies inference from 454 pyrosequencing.
Poh WT; Xia E; Chin-Inmanu K; Wong LP; Cheng AY; Malasit P; Suriyaphol P; Teo YY; Ong RT
BMC Bioinformatics; 2013 Dec; 14():355. PubMed ID: 24308284
[TBL] [Abstract][Full Text] [Related]
16. Evaluation of haplotype callers for next-generation sequencing of viruses.
Eliseev A; Gibson KM; Avdeyev P; Novik D; Bendall ML; Pérez-Losada M; Alexeev N; Crandall KA
Infect Genet Evol; 2020 Aug; 82():104277. PubMed ID: 32151775
[TBL] [Abstract][Full Text] [Related]
17. QSdpR: Viral quasispecies reconstruction via correlation clustering.
Barik S; Das S; Vikalo H
Genomics; 2018 Nov; 110(6):375-381. PubMed ID: 29268961
[TBL] [Abstract][Full Text] [Related]
18. SARS-CoV-2 Quasispecies Provides an Advantage Mutation Pool for the Epidemic Variants.
Sun F; Wang X; Tan S; Dan Y; Lu Y; Zhang J; Xu J; Tan Z; Xiang X; Zhou Y; He W; Wan X; Zhang W; Chen Y; Tan W; Deng G
Microbiol Spectr; 2021 Sep; 9(1):e0026121. PubMed ID: 34346744
[TBL] [Abstract][Full Text] [Related]
19. Sequencing approach to analyze the role of quasispecies for classical swine fever.
Töpfer A; Höper D; Blome S; Beer M; Beerenwinkel N; Ruggli N; Leifer I
Virology; 2013 Mar; 438(1):14-9. PubMed ID: 23415390
[TBL] [Abstract][Full Text] [Related]
20. Quantitative measures of within-host viral genetic diversity.
Fuhrmann L; Jablonski KP; Beerenwinkel N
Curr Opin Virol; 2021 Aug; 49():157-163. PubMed ID: 34153841
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
