176 related articles for article (PubMed ID: 38819557)
1. Methods for Pangenomic Core Detection.
Schulz T; Parmigiani L; Rempel A; Stoye J
Methods Mol Biol; 2024; 2802():73-106. PubMed ID: 38819557
[TBL] [Abstract][Full Text] [Related]
2. Squeakr: an exact and approximate k-mer counting system.
Pandey P; Bender MA; Johnson R; Patro R; Berger B
Bioinformatics; 2018 Feb; 34(4):568-575. PubMed ID: 29444235
[TBL] [Abstract][Full Text] [Related]
3. SAKE: Strobemer-assisted k-mer extraction.
Leinonen M; Salmela L
PLoS One; 2023; 18(11):e0294415. PubMed ID: 38019768
[TBL] [Abstract][Full Text] [Related]
4. Effective sequence similarity detection with strobemers.
Sahlin K
Genome Res; 2021 Nov; 31(11):2080-2094. PubMed ID: 34667119
[No Abstract] [Full Text] [Related]
5. Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.
Orenstein Y; Pellow D; Marçais G; Shamir R; Kingsford C
PLoS Comput Biol; 2017 Oct; 13(10):e1005777. PubMed ID: 28968408
[TBL] [Abstract][Full Text] [Related]
6. A brief review of software tools for pangenomics.
Xiao J; Zhang Z; Wu J; Yu J
Genomics Proteomics Bioinformatics; 2015 Feb; 13(1):73-6. PubMed ID: 25721608
[TBL] [Abstract][Full Text] [Related]
7. Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to
Shibuya Y; Belazzougui D; Kucherov G
J Comput Biol; 2022 Feb; 29(2):140-154. PubMed ID: 35049334
[No Abstract] [Full Text] [Related]
8. These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure.
Zhang Q; Pell J; Canino-Koning R; Howe AC; Brown CT
PLoS One; 2014; 9(7):e101271. PubMed ID: 25062443
[TBL] [Abstract][Full Text] [Related]
9. Fast Approximation of Frequent
Pellegrina L; Pizzi C; Vandin F
J Comput Biol; 2020 Apr; 27(4):534-549. PubMed ID: 31891535
[TBL] [Abstract][Full Text] [Related]
10. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers.
Marçais G; Kingsford C
Bioinformatics; 2011 Mar; 27(6):764-70. PubMed ID: 21217122
[TBL] [Abstract][Full Text] [Related]
11. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.
Kurtz S; Narechania A; Stein JC; Ware D
BMC Genomics; 2008 Oct; 9():517. PubMed ID: 18976482
[TBL] [Abstract][Full Text] [Related]
12. A space and time-efficient index for the compacted colored de Bruijn graph.
Almodaresi F; Sarkar H; Srivastava A; Patro R
Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
[TBL] [Abstract][Full Text] [Related]
13. Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems.
Pan T; Flick P; Jain C; Liu Y; Aluru S
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1117-1131. PubMed ID: 28991750
[TBL] [Abstract][Full Text] [Related]
14. Creating and Using Minimizer Sketches in Computational Genomics.
Zheng H; Marçais G; Kingsford C
J Comput Biol; 2023 Dec; 30(12):1251-1276. PubMed ID: 37646787
[TBL] [Abstract][Full Text] [Related]
15. KMC 2: fast and resource-frugal k-mer counting.
Deorowicz S; Kokot M; Grabowski S; Debudaj-Grabysz A
Bioinformatics; 2015 May; 31(10):1569-76. PubMed ID: 25609798
[TBL] [Abstract][Full Text] [Related]
16. Efficient minimizer orders for large values of
Pellow D; Pu L; Ekim B; Kotlar L; Berger B; Shamir R; Orenstein Y
Genome Res; 2023 Jul; 33(7):1154-1161. PubMed ID: 37558282
[TBL] [Abstract][Full Text] [Related]
17. Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters.
Pellow D; Filippova D; Kingsford C
J Comput Biol; 2017 Jun; 24(6):547-557. PubMed ID: 27828710
[TBL] [Abstract][Full Text] [Related]
18. Analysis of common k-mers for whole genome sequences using SSB-tree.
Choi JH; Cho HG
Genome Inform; 2002; 13():30-41. PubMed ID: 14571372
[TBL] [Abstract][Full Text] [Related]
19. A benchmark study of k-mer counting methods for high-throughput sequencing.
Manekar SC; Sathe SR
Gigascience; 2018 Dec; 7(12):. PubMed ID: 30346548
[TBL] [Abstract][Full Text] [Related]
20. KCOSS: an ultra-fast k-mer counter for assembled genome analysis.
Tang D; Li Y; Tan D; Fu J; Tang Y; Lin J; Zhao R; Du H; Zhao Z
Bioinformatics; 2022 Jan; 38(4):933-940. PubMed ID: 34849595
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]