BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

337 related articles for article (PubMed ID: 38819564)

  • 1. A Guide to Phylogenomic Inference.
    Patané JSL; Martins J; Setubal JC
    Methods Mol Biol; 2024; 2802():267-345. PubMed ID: 38819564
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Phylogenomics.
    Patané JSL; Martins J; Setubal JC
    Methods Mol Biol; 2018; 1704():103-187. PubMed ID: 29277865
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes.
    Collins C; Didelot X
    Methods Mol Biol; 2017; 1535():109-137. PubMed ID: 27914076
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Phylogenomic networks.
    Dagan T
    Trends Microbiol; 2011 Oct; 19(10):483-91. PubMed ID: 21820313
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Fungal Phylogenomics.
    Riley R; Nagy L
    Methods Mol Biol; 2018; 1775():251-266. PubMed ID: 29876823
    [TBL] [Abstract][Full Text] [Related]  

  • 6. UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction.
    Na SI; Kim YO; Yoon SH; Ha SM; Baek I; Chun J
    J Microbiol; 2018 Apr; 56(4):280-285. PubMed ID: 29492869
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome trees constructed using five different approaches suggest new major bacterial clades.
    Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
    BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ocean to Tree: Leveraging Single-Molecule RNA-Seq to Repair Genome Gene Models and Improve Phylogenomic Analysis of Gene and Species Evolution.
    Hsiao J; Deng LC; Moroz LL; Chalasani SH; Edsinger E
    Methods Mol Biol; 2024; 2757():461-490. PubMed ID: 38668979
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A phylum-level bacterial phylogenetic marker database.
    Wang Z; Wu M
    Mol Biol Evol; 2013 Jun; 30(6):1258-62. PubMed ID: 23519313
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Maximizing Power in Phylogenetics and Phylogenomics: A Perspective Illuminated by Fungal Big Data.
    Dornburg A; Townsend JP; Wang Z
    Adv Genet; 2017; 100():1-47. PubMed ID: 29153398
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A phylogenomic approach to microbial evolution.
    Sicheritz-Pontén T; Andersson SG
    Nucleic Acids Res; 2001 Jan; 29(2):545-52. PubMed ID: 11139625
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene Phylogenies.
    Zhu Q; Mirarab S
    Methods Mol Biol; 2022; 2569():137-165. PubMed ID: 36083447
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Measuring genome conservation across taxa: divided strains and united kingdoms.
    Kunin V; Ahren D; Goldovsky L; Janssen P; Ouzounis CA
    Nucleic Acids Res; 2005; 33(2):616-21. PubMed ID: 15681613
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AGO, a Framework for the Reconstruction of Ancestral Syntenies and Gene Orders.
    Cribbie EP; Doerr D; Chauve C
    Methods Mol Biol; 2024; 2802():247-265. PubMed ID: 38819563
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.
    Huerta-Cepas J; Serra F; Bork P
    Mol Biol Evol; 2016 Jun; 33(6):1635-8. PubMed ID: 26921390
    [TBL] [Abstract][Full Text] [Related]  

  • 16. pyPGCF: A Python Software for Phylogenomic Analysis, Species Demarcation, Identification of Core, and Fingerprint Proteins of Bacterial Genomes That Are Important for Plants.
    Nikolaidis M; Oliver SG; Amoutzias GD
    Methods Mol Biol; 2024; 2788():139-155. PubMed ID: 38656512
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
    Wu M; Scott AJ
    Bioinformatics; 2012 Apr; 28(7):1033-4. PubMed ID: 22332237
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Generation of accurate, expandable phylogenomic trees with uDance.
    Balaban M; Jiang Y; Zhu Q; McDonald D; Knight R; Mirarab S
    Nat Biotechnol; 2024 May; 42(5):768-777. PubMed ID: 37500914
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Orthology Prediction and Phylogenetic Analysis Methods in Plants.
    Sharaf A; Elateek S
    Methods Mol Biol; 2022; 2512():3-22. PubMed ID: 35817996
    [TBL] [Abstract][Full Text] [Related]  

  • 20. New approach for phylogenetic tree recovery based on genome-scale metabolic networks.
    Gamermann D; Montagud A; Conejero JA; Urchueguía JF; de Córdoba PF
    J Comput Biol; 2014 Jul; 21(7):508-19. PubMed ID: 24611553
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.