122 related articles for article (PubMed ID: 38839373)
1. Long read subcellular fractionation and sequencing reveals the translational fate of full-length mRNA isoforms during neuronal differentiation.
Ritter A; Draper JM; Vollmers C; Sanford J
Genome Res; 2024 Jun; ():. PubMed ID: 38839373
[TBL] [Abstract][Full Text] [Related]
2. Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq.
Martinez-Nunez RT; Sanford JR
Methods Mol Biol; 2016; 1358():99-108. PubMed ID: 26463379
[TBL] [Abstract][Full Text] [Related]
3. Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity.
Wijeratne S; Gonzalez MEH; Roach K; Miller KE; Schieffer KM; Fitch JR; Leonard J; White P; Kelly BJ; Cottrell CE; Mardis ER; Wilson RK; Miller AR
BMC Genomics; 2024 Jan; 25(1):122. PubMed ID: 38287261
[TBL] [Abstract][Full Text] [Related]
4. Exploring differential exon usage via short- and long-read RNA sequencing strategies.
Leshkowitz D; Kedmi M; Fried Y; Pilzer D; Keren-Shaul H; Ainbinder E; Dassa B
Open Biol; 2022 Sep; 12(9):220206. PubMed ID: 36168804
[TBL] [Abstract][Full Text] [Related]
5. A
Ramberg S; Høyheim B; Østbye TK; Andreassen R
Front Genet; 2021; 12():656334. PubMed ID: 33986770
[TBL] [Abstract][Full Text] [Related]
6. Frac-seq reveals isoform-specific recruitment to polyribosomes.
Sterne-Weiler T; Martinez-Nunez RT; Howard JM; Cvitovik I; Katzman S; Tariq MA; Pourmand N; Sanford JR
Genome Res; 2013 Oct; 23(10):1615-23. PubMed ID: 23783272
[TBL] [Abstract][Full Text] [Related]
7. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
[TBL] [Abstract][Full Text] [Related]
8. Isoform-specific translational control is evolutionarily conserved in primates.
Draper JM; Philipp J; Neeb ZT; Thomas R; Katzman S; Salama S; Haussler D; Sanford J
bioRxiv; 2023 May; ():. PubMed ID: 37131629
[TBL] [Abstract][Full Text] [Related]
9. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
[TBL] [Abstract][Full Text] [Related]
10. Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer.
Huang KK; Huang J; Wu JKL; Lee M; Tay ST; Kumar V; Ramnarayanan K; Padmanabhan N; Xu C; Tan ALK; Chan C; Kappei D; Göke J; Tan P
Genome Biol; 2021 Jan; 22(1):44. PubMed ID: 33482911
[TBL] [Abstract][Full Text] [Related]
11. Direct full-length RNA sequencing reveals unexpected transcriptome complexity during
Li R; Ren X; Ding Q; Bi Y; Xie D; Zhao Z
Genome Res; 2020 Feb; 30(2):287-298. PubMed ID: 32024662
[TBL] [Abstract][Full Text] [Related]
12. LAFITE Reveals the Complexity of Transcript Isoforms in Subcellular Fractions.
Zhang J; Lin X; Chen Y; Li TH; Lee AC; Chow EY; Cho WC; Chan TF
Adv Sci (Weinh); 2023 Jan; 10(3):e2203480. PubMed ID: 36461702
[TBL] [Abstract][Full Text] [Related]
13. Developmental isoform diversity in the human neocortex informs neuropsychiatric risk mechanisms.
Patowary A; Zhang P; Jops C; Vuong CK; Ge X; Hou K; Kim M; Gong N; Margolis M; Vo D; Wang X; Liu C; Pasaniuc B; Li JJ; Gandal MJ; de la Torre-Ubieta L
bioRxiv; 2023 Oct; ():. PubMed ID: 36993726
[TBL] [Abstract][Full Text] [Related]
14. Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish.
Naftaly AS; Pau S; White MA
Genome Res; 2021 Aug; 31(8):1486-1497. PubMed ID: 34131005
[TBL] [Abstract][Full Text] [Related]
15. Identification of Protein Isoforms Using Reference Databases Built from Long and Short Read RNA-Sequencing.
Tay AP; Hamey JJ; Martyn GE; Wilson LOW; Wilkins MR
J Proteome Res; 2022 Jul; 21(7):1628-1639. PubMed ID: 35612954
[TBL] [Abstract][Full Text] [Related]
16. Merging short and stranded long reads improves transcript assembly.
Kainth AS; Haddad GA; Hall JM; Ruthenburg AJ
PLoS Comput Biol; 2023 Oct; 19(10):e1011576. PubMed ID: 37883581
[TBL] [Abstract][Full Text] [Related]
17. Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rate.
Liu X; Shi X; Chen C; Zhang L
BMC Bioinformatics; 2015 Oct; 16():332. PubMed ID: 26475308
[TBL] [Abstract][Full Text] [Related]
18. Accurate identification and analysis of human mRNA isoforms using deep long read sequencing.
Tilgner H; Raha D; Habegger L; Mohiuddin M; Gerstein M; Snyder M
G3 (Bethesda); 2013 Mar; 3(3):387-97. PubMed ID: 23450794
[TBL] [Abstract][Full Text] [Related]
19. Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression.
Lianoglou S; Garg V; Yang JL; Leslie CS; Mayr C
Genes Dev; 2013 Nov; 27(21):2380-96. PubMed ID: 24145798
[TBL] [Abstract][Full Text] [Related]
20. CRISPR-Mediated Knockout of Long 3' UTR mRNA Isoforms in mESC-Derived Neurons.
Bae B; Miura P
Front Genet; 2021; 12():789434. PubMed ID: 34976020
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
