These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 38854090)

  • 21. promor: a comprehensive R package for label-free proteomics data analysis and predictive modeling.
    Ranathunge C; Patel SS; Pinky L; Correll VL; Chen S; Semmes OJ; Armstrong RK; Combs CD; Nyalwidhe JO
    Bioinform Adv; 2023; 3(1):vbad025. PubMed ID: 36922981
    [TBL] [Abstract][Full Text] [Related]  

  • 22. shinyÉPICo: a graphical pipeline to analyze Illumina DNA methylation arrays.
    Morante-Palacios O; Ballestar E
    Bioinformatics; 2021 Apr; 37(2):257-259. PubMed ID: 33416853
    [TBL] [Abstract][Full Text] [Related]  

  • 23. topr: an R package for viewing and annotating genetic association results.
    Juliusdottir T
    BMC Bioinformatics; 2023 Jun; 24(1):268. PubMed ID: 37380954
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite.
    Liu J; An Z; Luo J; Li J; Li F; Zhang Z
    Bioinformatics; 2020 Apr; 36(7):2033-2039. PubMed ID: 31794005
    [TBL] [Abstract][Full Text] [Related]  

  • 25. CCWeights: an R package and web application for automated evaluation and selection of weighting factors for accurate quantification using linear calibration curve.
    Dong Y; Wachsman T; Morgan L; Gazit E; Birkler RID
    Bioinform Adv; 2021; 1(1):vbab029. PubMed ID: 36700106
    [TBL] [Abstract][Full Text] [Related]  

  • 26. GENTANGLE: integrated computational design of gene entanglements.
    Martí JM; Hsu C; Rochereau C; Xu C; Blazejewski T; Nisonoff H; Leonard SP; Kang-Yun CS; Chlebek J; Ricci DP; Park D; Wang H; Listgarten J; Jiao Y; Allen JE
    Bioinformatics; 2024 Jul; 40(7):. PubMed ID: 38905502
    [TBL] [Abstract][Full Text] [Related]  

  • 27. CpGtools: a python package for DNA methylation analysis.
    Wei T; Nie J; Larson NB; Ye Z; Eckel-Passow JE; Robertson KD; Kocher JA; Wang L
    Bioinformatics; 2021 Jul; 37(11):1598-1599. PubMed ID: 31808791
    [TBL] [Abstract][Full Text] [Related]  

  • 28. ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2.
    Gustavsson EK; Zhang D; Reynolds RH; Garcia-Ruiz S; Ryten M
    Bioinformatics; 2022 Aug; 38(15):3844-3846. PubMed ID: 35751589
    [TBL] [Abstract][Full Text] [Related]  

  • 29. skater: an R package for SNP-based kinship analysis, testing, and evaluation.
    Turner SD; Nagraj VP; Scholz M; Jessa S; Acevedo C; Ge J; Woerner AE; Budowle B
    F1000Res; 2022; 11():18. PubMed ID: 35222994
    [No Abstract]   [Full Text] [Related]  

  • 30. gemBS: high throughput processing for DNA methylation data from bisulfite sequencing.
    Merkel A; Fernández-Callejo M; Casals E; Marco-Sola S; Schuyler R; Gut IG; Heath SC
    Bioinformatics; 2019 Mar; 35(5):737-742. PubMed ID: 30137223
    [TBL] [Abstract][Full Text] [Related]  

  • 31. BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data.
    Eagles NJ; Wilton R; Jaffe AE; Collado-Torres L
    BMC Bioinformatics; 2023 Sep; 24(1):340. PubMed ID: 37704947
    [TBL] [Abstract][Full Text] [Related]  

  • 32. cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data.
    Zhang W; Wei L; Huang J; Zhong B; Li J; Xu H; He S; Liu Y; Liu J; Lv H; Wang X
    Bioinformatics; 2021 Nov; 37(22):4251-4252. PubMed ID: 34042972
    [TBL] [Abstract][Full Text] [Related]  

  • 33. LongDat: an R package for covariate-sensitive longitudinal analysis of high-dimensional data.
    Chen CY; Löber U; Forslund SK
    Bioinform Adv; 2023; 3(1):vbad063. PubMed ID: 37359720
    [TBL] [Abstract][Full Text] [Related]  

  • 34. WALT: fast and accurate read mapping for bisulfite sequencing.
    Chen H; Smith AD; Chen T
    Bioinformatics; 2016 Nov; 32(22):3507-3509. PubMed ID: 27466624
    [TBL] [Abstract][Full Text] [Related]  

  • 35. ggseqlogo: a versatile R package for drawing sequence logos.
    Wagih O
    Bioinformatics; 2017 Nov; 33(22):3645-3647. PubMed ID: 29036507
    [TBL] [Abstract][Full Text] [Related]  

  • 36. scDMV: a zero-one inflated beta mixture model for DNA methylation variability with scBS-seq data.
    Zhou Y; Zhang Y; Peng M; Zhang Y; Li C; Shu L; Hu Y; Su J; Xu J
    Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38141207
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A (fire)cloud-based DNA methylation data preprocessing and quality control platform.
    Kangeyan D; Dunford A; Iyer S; Stewart C; Hanna M; Getz G; Aryee MJ
    BMC Bioinformatics; 2019 Mar; 20(1):160. PubMed ID: 30922215
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis.
    Jiang P; Sun K; Lun FM; Guo AM; Wang H; Chan KC; Chiu RW; Lo YM; Sun H
    PLoS One; 2014; 9(6):e100360. PubMed ID: 24945300
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
    Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Whole-Genome Bisulfite Sequencing for the Analysis of Genome-Wide DNA Methylation and Hydroxymethylation Patterns at Single-Nucleotide Resolution.
    Kernaleguen M; Daviaud C; Shen Y; Bonnet E; Renault V; Deleuze JF; Mauger F; Tost J
    Methods Mol Biol; 2018; 1767():311-349. PubMed ID: 29524144
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.