These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 38865491)

  • 1. Implementation of Girsanov Reweighting in OpenMM and Deeptime.
    Schäfer JL; Keller BG
    J Phys Chem B; 2024 Jun; 128(25):6014-6027. PubMed ID: 38865491
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Girsanov reweighting for path ensembles and Markov state models.
    Donati L; Hartmann C; Keller BG
    J Chem Phys; 2017 Jun; 146(24):244112. PubMed ID: 28668056
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Girsanov reweighting for metadynamics simulations.
    Donati L; Keller BG
    J Chem Phys; 2018 Aug; 149(7):072335. PubMed ID: 30134671
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Girsanov Reweighting Enhanced Sampling Technique (GREST): On-the-Fly Data-Driven Discovery of and Enhanced Sampling in Slow Collective Variables.
    Shmilovich K; Ferguson AL
    J Phys Chem A; 2023 Apr; 127(15):3497-3517. PubMed ID: 37036804
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Dynamical reweighting methods for Markov models.
    Kieninger S; Donati L; Keller BG
    Curr Opin Struct Biol; 2020 Apr; 61():124-131. PubMed ID: 31958761
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Dynamical Reweighting for Biased Rare Event Simulations.
    Keller BG; Bolhuis PG
    Annu Rev Phys Chem; 2024 Jun; 75(1):137-162. PubMed ID: 38941527
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Path probability ratios for Langevin dynamics-Exact and approximate.
    Kieninger S; Keller BG
    J Chem Phys; 2021 Mar; 154(9):094102. PubMed ID: 33685138
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Connecting dynamic reweighting Algorithms: Derivation of the dynamic reweighting family tree.
    Linker SM; Weiß RG; Riniker S
    J Chem Phys; 2020 Dec; 153(23):234106. PubMed ID: 33353335
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Data Reweighting in Metadynamics Simulations.
    Schäfer TM; Settanni G
    J Chem Theory Comput; 2020 Apr; 16(4):2042-2052. PubMed ID: 32192340
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improved reweighting protocols for variationally enhanced sampling simulations with multiple walkers.
    Stevensson B; Edén M
    Phys Chem Chem Phys; 2023 Aug; 25(33):22063-22078. PubMed ID: 37560777
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Steady-state parameter sensitivity in stochastic modeling via trajectory reweighting.
    Warren PB; Allen RJ
    J Chem Phys; 2012 Mar; 136(10):104106. PubMed ID: 22423827
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Probability Density Reweighting of High-Temperature Molecular Dynamics.
    Chen JN; Dai B; Wu YD
    J Chem Theory Comput; 2024 Jun; 20(12):4977-4985. PubMed ID: 38758038
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Molecular Dynamics and Monte Carlo simulations in the microcanonical ensemble: Quantitative comparison and reweighting techniques.
    Schierz P; Zierenberg J; Janke W
    J Chem Phys; 2015 Oct; 143(13):134114. PubMed ID: 26450299
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Potential-based dynamical reweighting for Markov state models of protein dynamics.
    Weber JK; Pande VS
    J Chem Theory Comput; 2015 Jun; 11(6):2412-20. PubMed ID: 26575541
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Temperature-Accelerated Sampling and Amplified Collective Motion with Adiabatic Reweighting to Obtain Canonical Distributions and Ensemble Averages.
    Hu Y; Hong W; Shi Y; Liu H
    J Chem Theory Comput; 2012 Oct; 8(10):3777-92. PubMed ID: 26593019
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Determination of Structural Ensembles of Proteins: Restraining vs Reweighting.
    Rangan R; Bonomi M; Heller GT; Cesari A; Bussi G; Vendruscolo M
    J Chem Theory Comput; 2018 Dec; 14(12):6632-6641. PubMed ID: 30428663
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation.
    Miao Y; Sinko W; Pierce L; Bucher D; Walker RC; McCammon JA
    J Chem Theory Comput; 2014 Jul; 10(7):2677-2689. PubMed ID: 25061441
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Instanton based importance sampling for rare events in stochastic PDEs.
    Ebener L; Margazoglou G; Friedrich J; Biferale L; Grauer R
    Chaos; 2019 Jun; 29(6):063102. PubMed ID: 31266309
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field.
    Lee J; Cheng X; Swails JM; Yeom MS; Eastman PK; Lemkul JA; Wei S; Buckner J; Jeong JC; Qi Y; Jo S; Pande VS; Case DA; Brooks CL; MacKerell AD; Klauda JB; Im W
    J Chem Theory Comput; 2016 Jan; 12(1):405-13. PubMed ID: 26631602
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular Dynamics Simulations Are Redefining Our View of Peptides Interacting with Biological Membranes.
    Ulmschneider JP; Ulmschneider MB
    Acc Chem Res; 2018 May; 51(5):1106-1116. PubMed ID: 29667836
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.