BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

106 related articles for article (PubMed ID: 38869785)

  • 1. MNase-Seq Analysis for Identifying Stress-Altered Nucleosome Occupancy in Plants.
    Watkins C; Willyerd KL; Liao CP; Ruhl DR; Chen C
    Methods Mol Biol; 2024; 2832():33-46. PubMed ID: 38869785
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.
    Pajoro A; Muiño JM; Angenent GC; Kaufmann K
    Methods Mol Biol; 2018; 1675():167-181. PubMed ID: 29052192
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-seq).
    Hoeijmakers WAM; Bártfai R
    Methods Mol Biol; 2018; 1689():83-101. PubMed ID: 29027167
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning.
    Gutiérrez G; Millán-Zambrano G; Medina DA; Jordán-Pla A; Pérez-Ortín JE; Peñate X; Chávez S
    Epigenetics Chromatin; 2017 Dec; 10(1):58. PubMed ID: 29212533
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Analyses of Promoter , Enhancer, and Nucleosome Organization in Mammalian Cells by MNase-Seq.
    Esnault C; Magat T; García-Oliver E; Andrau JC
    Methods Mol Biol; 2021; 2351():93-104. PubMed ID: 34382185
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.
    Rizzo JM; Bard JE; Buck MJ
    BMC Mol Biol; 2012 May; 13():15. PubMed ID: 22559821
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.
    Vera DL; Madzima TF; Labonne JD; Alam MP; Hoffman GG; Girimurugan SB; Zhang J; McGinnis KM; Dennis JH; Bass HW
    Plant Cell; 2014 Oct; 26(10):3883-93. PubMed ID: 25361955
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Profiling Accessible Chromatin and Nucleosomes in the Mammalian Genome.
    Lim HW; Iwafuchi M
    Methods Mol Biol; 2023; 2599():59-68. PubMed ID: 36427143
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Single-Assay Profiling of Nucleosome Occupancy and Chromatin Accessibility.
    Cook A; Mieczkowski J; Tolstorukov MY
    Curr Protoc Mol Biol; 2017 Oct; 120():21.34.1-21.34.18. PubMed ID: 28967996
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantitative MNase-seq accurately maps nucleosome occupancy levels.
    Chereji RV; Bryson TD; Henikoff S
    Genome Biol; 2019 Sep; 20(1):198. PubMed ID: 31519205
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-Wide Identification of Open Chromatin in Plants Using MH-Seq.
    Zhang A; Li X; Zhao H; Jiang J; Zhang W
    Methods Mol Biol; 2023; 2594():29-43. PubMed ID: 36264486
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DNA Accessibility by MNase Digestions.
    Farrants AÖ
    Methods Mol Biol; 2018; 1689():77-82. PubMed ID: 29027166
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Application of MNase-Seq in the Global Mapping of Nucleosome Positioning in Plants.
    Zhang W; Jiang J
    Methods Mol Biol; 2018; 1830():353-366. PubMed ID: 30043381
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CAM: A quality control pipeline for MNase-seq data.
    Hu S; Chen X; Liao J; Chen Y; Zhao C; Zhang Y
    PLoS One; 2017; 12(8):e0182771. PubMed ID: 28787030
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction.
    Mueller B; Mieczkowski J; Kundu S; Wang P; Sadreyev R; Tolstorukov MY; Kingston RE
    Genes Dev; 2017 Mar; 31(5):451-462. PubMed ID: 28356342
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome-wide approaches to determining nucleosome occupancy in metazoans using MNase-Seq.
    Cui K; Zhao K
    Methods Mol Biol; 2012; 833():413-9. PubMed ID: 22183607
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Low-Input MNase Accessibility of Chromatin (Low-Input MACC).
    Lion M; Tolstorukov MY; Oettinger MA
    Curr Protoc Mol Biol; 2019 Jun; 127(1):e91. PubMed ID: 31237423
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MNase titration reveals differences between nucleosome occupancy and chromatin accessibility.
    Mieczkowski J; Cook A; Bowman SK; Mueller B; Alver BH; Kundu S; Deaton AM; Urban JA; Larschan E; Park PJ; Kingston RE; Tolstorukov MY
    Nat Commun; 2016 May; 7():11485. PubMed ID: 27151365
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Analyzing the global chromatin structure of keratinocytes by MNase-seq.
    Rizzo JM; Sinha S
    Methods Mol Biol; 2014; 1195():49-59. PubMed ID: 24676786
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MPE-seq, a new method for the genome-wide analysis of chromatin structure.
    Ishii H; Kadonaga JT; Ren B
    Proc Natl Acad Sci U S A; 2015 Jul; 112(27):E3457-65. PubMed ID: 26080409
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.