These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

133 related articles for article (PubMed ID: 38888487)

  • 1. Knot or not? Identifying unknotted proteins in knotted families with sequence-based Machine Learning model.
    Sikora M; Klimentova E; Uchal D; Sramkova D; Perlinska AP; Nguyen ML; Korpacz M; Malinowska R; Nowakowski S; Rubach P; Simecek P; Sulkowska JI
    Protein Sci; 2024 Jul; 33(7):e4998. PubMed ID: 38888487
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Knotted vs. unknotted proteins: evidence of knot-promoting loops.
    Potestio R; Micheletti C; Orland H
    PLoS Comput Biol; 2010 Jul; 6(7):e1000864. PubMed ID: 20686683
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Everything AlphaFold tells us about protein knots.
    Perlinska A; Sikora M; Sulkowska JI
    J Mol Biol; 2024 Jul; ():168715. PubMed ID: 39029890
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Untying a Protein Knot by Circular Permutation.
    Chuang YC; Hu IC; Lyu PC; Hsu SD
    J Mol Biol; 2019 Feb; 431(4):857-863. PubMed ID: 30639189
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Investigation of the structural dynamics of a knotted protein and its unknotted analog using molecular dynamics.
    Silva JCA; Chaves EJF; de Carvalho GAU; Rocha GB
    J Mol Model; 2022 Mar; 28(4):108. PubMed ID: 35357594
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Effects of knots on protein folding properties.
    Soler MA; Faísca PF
    PLoS One; 2013; 8(9):e74755. PubMed ID: 24023962
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.
    Tkaczuk KL; Dunin-Horkawicz S; Purta E; Bujnicki JM
    BMC Bioinformatics; 2007 Mar; 8():73. PubMed ID: 17338813
    [TBL] [Abstract][Full Text] [Related]  

  • 8. AlphaFold predicts novel human proteins with knots.
    Perlinska AP; Niemyska WH; Gren BA; Bukowicki M; Nowakowski S; Rubach P; Sulkowska JI
    Protein Sci; 2023 May; 32(5):e4631. PubMed ID: 36960558
    [TBL] [Abstract][Full Text] [Related]  

  • 9. In Search of Functional Advantages of Knots in Proteins.
    Dabrowski-Tumanski P; Stasiak A; Sulkowska JI
    PLoS One; 2016; 11(11):e0165986. PubMed ID: 27806097
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Revealing Cooperation between Knotted Conformation and Dimerization in Protein Stabilization by Molecular Dynamics Simulations.
    Xu Y; Li S; Yan Z; Ge B; Huang F; Yue T
    J Phys Chem Lett; 2019 Oct; 10(19):5815-5822. PubMed ID: 31525988
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Stretching Response of Knotted and Unknotted Polymer Chains.
    Caraglio M; Micheletti C; Orlandini E
    Phys Rev Lett; 2015 Oct; 115(18):188301. PubMed ID: 26565504
    [TBL] [Abstract][Full Text] [Related]  

  • 12. AlphaFold predicts the most complex protein knot and composite protein knots.
    Brems MA; Runkel R; Yeates TO; Virnau P
    Protein Sci; 2022 Aug; 31(8):e4380. PubMed ID: 35900026
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Knot localization in proteins.
    Rawdon EJ; Millett KC; Sułkowska JI; Stasiak A
    Biochem Soc Trans; 2013 Apr; 41(2):538-41. PubMed ID: 23514150
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Is There a Functional Role for the Knotted Topology in Protein UCH-L1?
    Ferreira SGF; Sriramoju MK; Hsu SD; Faísca PFN; Machuqueiro M
    J Chem Inf Model; 2024 Jul; ():. PubMed ID: 39045738
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Topological descriptions of protein folding.
    Flapan E; He A; Wong H
    Proc Natl Acad Sci U S A; 2019 May; 116(19):9360-9369. PubMed ID: 31000594
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Exploring the electronic structure of knotted proteins: the case of two ornithine transcarbamylase family.
    Alves Silva JC; Barden Grillo I; A Urquiza-Carvalho G; Bruno Rocha G
    J Mol Model; 2024 Jul; 30(8):265. PubMed ID: 39008190
    [TBL] [Abstract][Full Text] [Related]  

  • 17. AlphaFold Blindness to Topological Barriers Affects Its Ability to Correctly Predict Proteins' Topology.
    Dabrowski-Tumanski P; Stasiak A
    Molecules; 2023 Nov; 28(22):. PubMed ID: 38005184
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Theory of self-contact in Kirchhoff rods with applications to supercoiling of knotted and unknotted DNA plasmids.
    Coleman BD; Swigon D
    Philos Trans A Math Phys Eng Sci; 2004 Jul; 362(1820):1281-99. PubMed ID: 15306451
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Homology of homologous knotted proteins.
    Benjamin K; Mukta L; Moryoussef G; Uren C; Harrington HA; Tillmann U; Barbensi A
    J R Soc Interface; 2023 Apr; 20(201):20220727. PubMed ID: 37122282
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Knotted artifacts in predicted 3D RNA structures.
    Gren BA; Antczak M; Zok T; Sulkowska JI; Szachniuk M
    PLoS Comput Biol; 2024 Jun; 20(6):e1011959. PubMed ID: 38900780
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.