126 related articles for article (PubMed ID: 38889133)
1. SinglePointRNA, an user-friendly application implementing single cell RNA-seq analysis software.
Puente-Santamaría L; Del Peso L
PLoS One; 2024; 19(6):e0300567. PubMed ID: 38889133
[TBL] [Abstract][Full Text] [Related]
2. Shaoxia: a web-based interactive analysis platform for single cell RNA sequencing data.
Wei W; Xia X; Li T; Chen Q; Feng X
BMC Genomics; 2024 Apr; 25(1):402. PubMed ID: 38658838
[TBL] [Abstract][Full Text] [Related]
3. GENAVi: a shiny web application for gene expression normalization, analysis and visualization.
Reyes ALP; Silva TC; Coetzee SG; Plummer JT; Davis BD; Chen S; Hazelett DJ; Lawrenson K; Berman BP; Gayther SA; Jones MR
BMC Genomics; 2019 Oct; 20(1):745. PubMed ID: 31619158
[TBL] [Abstract][Full Text] [Related]
4. Single Cell Explorer, collaboration-driven tools to leverage large-scale single cell RNA-seq data.
Feng D; Whitehurst CE; Shan D; Hill JD; Yue YG
BMC Genomics; 2019 Aug; 20(1):676. PubMed ID: 31455220
[TBL] [Abstract][Full Text] [Related]
5. DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics.
Ghannoum S; Leoncio Netto W; Fantini D; Ragan-Kelley B; Parizadeh A; Jonasson E; Ståhlberg A; Farhan H; Köhn-Luque A
Int J Mol Sci; 2021 Jan; 22(3):. PubMed ID: 33573289
[TBL] [Abstract][Full Text] [Related]
6. Systematic evaluation with practical guidelines for single-cell and spatially resolved transcriptomics data simulation under multiple scenarios.
Duo H; Li Y; Lan Y; Tao J; Yang Q; Xiao Y; Sun J; Li L; Nie X; Zhang X; Liang G; Liu M; Hao Y; Li B
Genome Biol; 2024 Jun; 25(1):145. PubMed ID: 38831386
[TBL] [Abstract][Full Text] [Related]
7. scViewer: An Interactive Single-Cell Gene Expression Visualization Tool.
Patil AR; Kumar G; Zhou H; Warren L
Cells; 2023 May; 12(11):. PubMed ID: 37296611
[TBL] [Abstract][Full Text] [Related]
8. IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis.
Monier B; McDermaid A; Wang C; Zhao J; Miller A; Fennell A; Ma Q
PLoS Comput Biol; 2019 Feb; 15(2):e1006792. PubMed ID: 30763315
[TBL] [Abstract][Full Text] [Related]
9. A guide to single-cell RNA sequencing analysis using web-based tools for non-bioinformatician.
Yarlagadda S; Giorgio TD
FEBS J; 2024 Jun; 291(12):2545-2561. PubMed ID: 38148322
[TBL] [Abstract][Full Text] [Related]
10. An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data.
Mah CK; Wenzel AT; Juarez EF; Tabor T; Reich MM; Mesirov JP
F1000Res; 2018; 7():1306. PubMed ID: 31316748
[TBL] [Abstract][Full Text] [Related]
11. Ranking of cell clusters in a single-cell RNA-sequencing analysis framework using prior knowledge.
Oulas A; Savva K; Karathanasis N; Spyrou GM
PLoS Comput Biol; 2024 Apr; 20(4):e1011550. PubMed ID: 38635836
[TBL] [Abstract][Full Text] [Related]
12. visnormsc: A Graphical User Interface to Normalize Single-cell RNA Sequencing Data.
Tang L; Zhou N
Interdiscip Sci; 2018 Sep; 10(3):636-640. PubMed ID: 29280088
[TBL] [Abstract][Full Text] [Related]
13. Normalization of Single-Cell RNA-Seq Data.
Risso D
Methods Mol Biol; 2021; 2284():303-329. PubMed ID: 33835450
[TBL] [Abstract][Full Text] [Related]
14. Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization.
Bacher R; Chu LF; Argus C; Bolin JM; Knight P; Thomson JA; Stewart R; Kendziorski C
Nucleic Acids Res; 2022 Jan; 50(2):e12. PubMed ID: 34850101
[TBL] [Abstract][Full Text] [Related]
15. CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using R-Shiny.
Kong GL; Nguyen TT; Rosales WK; Panikar AD; Cheney JHW; Lusardi TA; Yashar WM; Curtiss BM; Carratt SA; Braun TP; Maxson JE
BMC Bioinformatics; 2024 Apr; 25(1):142. PubMed ID: 38566005
[TBL] [Abstract][Full Text] [Related]
16. webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration.
Zhang Z; Cui F; Su W; Dou L; Xu A; Cao C; Zou Q
Bioinformatics; 2022 Jun; 38(13):3488-3489. PubMed ID: 35604082
[TBL] [Abstract][Full Text] [Related]
17. Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.
Yang A; Troup M; Lin P; Ho JW
Bioinformatics; 2017 Mar; 33(5):767-769. PubMed ID: 28025200
[TBL] [Abstract][Full Text] [Related]
18. Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference.
Dong X; Leary JR; Yang C; Brusko MA; Brusko TM; Bacher R
Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38725155
[TBL] [Abstract][Full Text] [Related]
19. Latent cellular analysis robustly reveals subtle diversity in large-scale single-cell RNA-seq data.
Cheng C; Easton J; Rosencrance C; Li Y; Ju B; Williams J; Mulder HL; Pang Y; Chen W; Chen X
Nucleic Acids Res; 2019 Dec; 47(22):e143. PubMed ID: 31566233
[TBL] [Abstract][Full Text] [Related]
20. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
