These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 38900631)

  • 1. Protocol for multimodal profiling of human kidneys with simultaneous high-throughput ATAC and RNA expression with sequencing.
    Li H; Humphreys BD
    STAR Protoc; 2024 Sep; 5(3):103049. PubMed ID: 38900631
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Measuring B Cell Chromatin Accessibility by One-Step ATAC-seq.
    Hicks SL; Scharer CD
    Methods Mol Biol; 2024; 2826():55-63. PubMed ID: 39017885
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
    Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
    Elife; 2020 Nov; 9():. PubMed ID: 33191916
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Low-input ATAC&mRNA-seq protocol for simultaneous profiling of chromatin accessibility and gene expression.
    Li R; Grimm SA; Wade PA
    STAR Protoc; 2021 Sep; 2(3):100764. PubMed ID: 34485936
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Chromatin accessibility profiling by ATAC-seq.
    Grandi FC; Modi H; Kampman L; Corces MR
    Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Epigenetic Application of ATAC-Seq Based on Tn5 Transposase Purification Technology.
    Li W; Tim Wu U; Cheng Y; Huang Y; Mao L; Sun M; Qiu C; Zhou L; Gao L
    Genet Res (Camb); 2022; 2022():8429207. PubMed ID: 36062065
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Review and Evaluate the Bioinformatics Analysis Strategies of ATAC-seq and CUT&Tag Data.
    Cheng S; Miao B; Li T; Zhao G; Zhang B
    Genomics Proteomics Bioinformatics; 2024 Sep; 22(3):. PubMed ID: 39255248
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Profiling single-cell chromatin accessibility in plants.
    Marand AP; Zhang X; Nelson J; Braga Dos Reis PA; Schmitz RJ
    STAR Protoc; 2021 Sep; 2(3):100737. PubMed ID: 34430912
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protocol for chromatin accessibility profiling of human endothelial cells cultured under fluid shear stress using ATAC-seq.
    Raaz L; Mendez PL; Mundlos S; Knaus P; Jatzlau J
    STAR Protoc; 2024 Mar; 5(1):102859. PubMed ID: 38329877
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protocol for assaying chromatin accessibility using ATAC-seq in plants.
    Wang FX; Shang GD; Wu LY; Mai YX; Gao J; Xu ZG; Wang JW
    STAR Protoc; 2021 Mar; 2(1):100289. PubMed ID: 33532736
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Using Chromatin Accessibility to Delineate Therapeutic Subtypes in Pancreatic Cancer Patient-Derived Cell Lines.
    Brunton H; Garner IM; Bailey UM; Upstill-Goddard R; Bailey PJ
    STAR Protoc; 2020 Sep; 1(2):100079. PubMed ID: 33111113
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protocol for analysis of single-cell sequencing data by Seqtometry.
    Kousnetsov R; Hawiger D
    STAR Protoc; 2024 Sep; 5(3):103209. PubMed ID: 39096493
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
    Tatara M; Ikeda T; Namekawa SH; Maezawa S
    Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ATAC-seq protocol for the profiling of chromatin accessibility of in situ fixed quiescent and activated muscle stem cells.
    Dong A; Chan ITC; Cheung TH
    STAR Protoc; 2023 Sep; 4(3):102376. PubMed ID: 37352103
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Mouse kidney nuclear isolation and library preparation for single-cell combinatorial indexing RNA sequencing.
    Li H; Humphreys BD
    STAR Protoc; 2022 Dec; 3(4):101904. PubMed ID: 36595916
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Analytical Approaches for ATAC-seq Data Analysis.
    Smith JP; Sheffield NC
    Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility using scRNA-Seq and scATAC-Seq.
    Weir K; Leavey P; Santiago C; Blackshaw S
    J Vis Exp; 2021 Mar; (169):. PubMed ID: 33779599
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
    De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
    Elife; 2022 Feb; 11():. PubMed ID: 35195064
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input.
    Handa T; Harada A; Maehara K; Sato S; Nakao M; Goto N; Kurumizaka H; Ohkawa Y; Kimura H
    Nat Protoc; 2020 Oct; 15(10):3334-3360. PubMed ID: 32807906
    [TBL] [Abstract][Full Text] [Related]  

  • 20. From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
    Yan F; Powell DR; Curtis DJ; Wong NC
    Genome Biol; 2020 Feb; 21(1):22. PubMed ID: 32014034
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.