These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
137 related articles for article (PubMed ID: 38921957)
1. Accurate prediction of CDR-H3 loop structures of antibodies with deep learning. Chen H; Fan X; Zhu S; Pei Y; Zhang X; Zhang X; Liu L; Qian F; Tian B Elife; 2024 Jun; 12():. PubMed ID: 38921957 [TBL] [Abstract][Full Text] [Related]
2. Geometric potentials from deep learning improve prediction of CDR H3 loop structures. Ruffolo JA; Guerra C; Mahajan SP; Sulam J; Gray JJ Bioinformatics; 2020 Jul; 36(Suppl_1):i268-i275. PubMed ID: 32657412 [TBL] [Abstract][Full Text] [Related]
3. Predicting antibody complementarity determining region structures without classification. Choi Y; Deane CM Mol Biosyst; 2011 Dec; 7(12):3327-34. PubMed ID: 22011953 [TBL] [Abstract][Full Text] [Related]
4. Structural Classification of CDR-H3 in Single-Domain V Kuroda D; Tsumoto K Methods Mol Biol; 2023; 2552():61-79. PubMed ID: 36346585 [TBL] [Abstract][Full Text] [Related]
5. Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling. Woo H; Kim Y; Seok C PLoS Comput Biol; 2024 Jun; 20(6):e1012239. PubMed ID: 38913733 [TBL] [Abstract][Full Text] [Related]
6. ABlooper: fast accurate antibody CDR loop structure prediction with accuracy estimation. Abanades B; Georges G; Bujotzek A; Deane CM Bioinformatics; 2022 Mar; 38(7):1877-1880. PubMed ID: 35099535 [TBL] [Abstract][Full Text] [Related]
7. Ab initio structure prediction of the antibody hypervariable H3 loop. Zhu K; Day T Proteins; 2013 Jun; 81(6):1081-9. PubMed ID: 23255066 [TBL] [Abstract][Full Text] [Related]
8. Structural diversity in a human antibody germline library. Teplyakov A; Obmolova G; Malia TJ; Luo J; Muzammil S; Sweet R; Almagro JC; Gilliland GL MAbs; 2016; 8(6):1045-63. PubMed ID: 27210805 [TBL] [Abstract][Full Text] [Related]
9. The diversity of H3 loops determines the antigen-binding tendencies of antibody CDR loops. Tsuchiya Y; Mizuguchi K Protein Sci; 2016 Apr; 25(4):815-25. PubMed ID: 26749247 [TBL] [Abstract][Full Text] [Related]
10. CDR-H3 loop ensemble in solution - conformational selection upon antibody binding. Fernández-Quintero ML; Kraml J; Georges G; Liedl KR MAbs; 2019; 11(6):1077-1088. PubMed ID: 31148507 [TBL] [Abstract][Full Text] [Related]
11. Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction. Zhu K; Day T; Warshaviak D; Murrett C; Friesner R; Pearlman D Proteins; 2014 Aug; 82(8):1646-55. PubMed ID: 24619874 [TBL] [Abstract][Full Text] [Related]
12. CDR-H3 diversity is not required for antigen recognition by synthetic antibodies. Persson H; Ye W; Wernimont A; Adams JJ; Koide A; Koide S; Lam R; Sidhu SS J Mol Biol; 2013 Feb; 425(4):803-11. PubMed ID: 23219464 [TBL] [Abstract][Full Text] [Related]
13. Systematic classification of CDR-L3 in antibodies: implications of the light chain subtypes and the VL-VH interface. Kuroda D; Shirai H; Kobori M; Nakamura H Proteins; 2009 Apr; 75(1):139-46. PubMed ID: 18798566 [TBL] [Abstract][Full Text] [Related]
15. Antibody humanization-the Influence of the antibody framework on the CDR-H3 loop ensemble in solution. Fernández-Quintero ML; Heiss MC; Liedl KR Protein Eng Des Sel; 2019 Dec; 32(9):411-422. PubMed ID: 32129452 [TBL] [Abstract][Full Text] [Related]
16. Antibodies as a model system for comparative model refinement. Sellers BD; Nilmeier JP; Jacobson MP Proteins; 2010 Aug; 78(11):2490-505. PubMed ID: 20602354 [TBL] [Abstract][Full Text] [Related]
17. Characterization of a high-affinity human antibody with a disulfide bridge in the third complementarity-determining region of the heavy chain. Almagro JC; Raghunathan G; Beil E; Janecki DJ; Chen Q; Dinh T; LaCombe A; Connor J; Ware M; Kim PH; Swanson RV; Fransson J J Mol Recognit; 2012 Mar; 25(3):125-35. PubMed ID: 22407976 [TBL] [Abstract][Full Text] [Related]
18. Structural classification of CDR-H3 revisited: a lesson in antibody modeling. Kuroda D; Shirai H; Kobori M; Nakamura H Proteins; 2008 Nov; 73(3):608-20. PubMed ID: 18473362 [TBL] [Abstract][Full Text] [Related]
19. Computational design of protein antigens that interact with the CDR H3 loop of HIV broadly neutralizing antibody 2F5. Azoitei ML; Ban YA; Kalyuzhny O; Guenaga J; Schroeter A; Porter J; Wyatt R; Schief WR Proteins; 2014 Oct; 82(10):2770-82. PubMed ID: 25043744 [TBL] [Abstract][Full Text] [Related]
20. Investigating the ability of deep learning-based structure prediction to extrapolate and/or enrich the set of antibody CDR canonical forms. Greenshields-Watson A; Abanades B; Deane CM Front Immunol; 2024; 15():1352703. PubMed ID: 38482007 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]