These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 38932690)

  • 1. A Handle on Mass Coincidence Errors in
    Schulte D; Snijder J
    J Proteome Res; 2024 Aug; 23(8):3552-3559. PubMed ID: 38932690
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?
    Muth T; Renard BY
    Brief Bioinform; 2018 Sep; 19(5):954-970. PubMed ID: 28369237
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly.
    Beslic D; Tscheuschner G; Renard BY; Weller MG; Muth T
    Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36545804
    [TBL] [Abstract][Full Text] [Related]  

  • 4. pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra.
    Chi H; Chen H; He K; Wu L; Yang B; Sun RX; Liu J; Zeng WF; Song CQ; He SM; Dong MQ
    J Proteome Res; 2013 Feb; 12(2):615-25. PubMed ID: 23272783
    [TBL] [Abstract][Full Text] [Related]  

  • 5. pNovo: de novo peptide sequencing and identification using HCD spectra.
    Chi H; Sun RX; Yang B; Song CQ; Wang LH; Liu C; Fu Y; Yuan ZF; Wang HP; He SM; Dong MQ
    J Proteome Res; 2010 May; 9(5):2713-24. PubMed ID: 20329752
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Application of de Novo Sequencing to Large-Scale Complex Proteomics Data Sets.
    Devabhaktuni A; Elias JE
    J Proteome Res; 2016 Mar; 15(3):732-42. PubMed ID: 26743026
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PowerNovo: de novo peptide sequencing via tandem mass spectrometry using an ensemble of transformer and BERT models.
    Petrovskiy DV; Nikolsky KS; Kulikova LI; Rudnev VR; Butkova TV; Malsagova KA; Kopylov AT; Kaysheva AL
    Sci Rep; 2024 Jul; 14(1):15000. PubMed ID: 38951578
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Algorithms for the de novo sequencing of peptides from tandem mass spectra.
    Allmer J
    Expert Rev Proteomics; 2011 Oct; 8(5):645-57. PubMed ID: 21999834
    [TBL] [Abstract][Full Text] [Related]  

  • 9. pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework.
    Yang H; Chi H; Zeng WF; Zhou WJ; He SM
    Bioinformatics; 2019 Jul; 35(14):i183-i190. PubMed ID: 31510687
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Proteomics-grade de novo sequencing approach.
    Savitski MM; Nielsen ML; Kjeldsen F; Zubarev RA
    J Proteome Res; 2005; 4(6):2348-54. PubMed ID: 16335984
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Novor: real-time peptide de novo sequencing software.
    Ma B
    J Am Soc Mass Spectrom; 2015 Nov; 26(11):1885-94. PubMed ID: 26122521
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Precision
    Yang H; Li YC; Zhao MZ; Wu FL; Wang X; Xiao WD; Wang YH; Zhang JL; Wang FQ; Xu F; Zeng WF; Overall CM; He SM; Chi H; Xu P
    Mol Cell Proteomics; 2019 Apr; 18(4):773-785. PubMed ID: 30622160
    [No Abstract]   [Full Text] [Related]  

  • 13. De novo sequencing methods in proteomics.
    Hughes C; Ma B; Lajoie GA
    Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Combining De Novo Peptide Sequencing Algorithms, A Synergistic Approach to Boost Both Identifications and Confidence in Bottom-up Proteomics.
    Blank-Landeshammer B; Kollipara L; Biß K; Pfenninger M; Malchow S; Shuvaev K; Zahedi RP; Sickmann A
    J Proteome Res; 2017 Sep; 16(9):3209-3218. PubMed ID: 28741358
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.
    Halligan BD; Ruotti V; Twigger SN; Greene AS
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W376-81. PubMed ID: 15980493
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sequence-to-sequence translation from mass spectra to peptides with a transformer model.
    Yilmaz M; Fondrie WE; Bittremieux W; Melendez CF; Nelson R; Ananth V; Oh S; Noble WS
    Nat Commun; 2024 Jul; 15(1):6427. PubMed ID: 39080256
    [TBL] [Abstract][Full Text] [Related]  

  • 17. NIPTL-Novo: Non-isobaric peptide termini labeling assisted peptide de novo sequencing.
    Zhang S; Shan Y; Zhang S; Sui Z; Zhang L; Liang Z; Zhang Y
    J Proteomics; 2017 Feb; 154():40-48. PubMed ID: 27974235
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Peptide de novo sequencing using 157 nm photodissociation in a tandem time-of-flight mass spectrometer.
    Zhang L; Reilly JP
    Anal Chem; 2010 Feb; 82(3):898-908. PubMed ID: 20058881
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.
    Pan C; Park BH; McDonald WH; Carey PA; Banfield JF; VerBerkmoes NC; Hettich RL; Samatova NF
    BMC Bioinformatics; 2010 Mar; 11():118. PubMed ID: 20205730
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A quantitative tool to distinguish isobaric leucine and isoleucine residues for mass spectrometry-based de novo monoclonal antibody sequencing.
    Poston CN; Higgs RE; You J; Gelfanova V; Hale JE; Knierman MD; Siegel R; Gutierrez JA
    J Am Soc Mass Spectrom; 2014 Jul; 25(7):1228-36. PubMed ID: 24845350
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.