These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
160 related articles for article (PubMed ID: 38936341)
21. PredGCN: a Pruning-enabled Gene-Cell Net for automatic cell annotation of single cell transcriptome data. Qi Q; Wang Y; Huang Y; Fan Y; Li X Bioinformatics; 2024 Jul; 40(7):. PubMed ID: 38924517 [TBL] [Abstract][Full Text] [Related]
23. CellsFromSpace: a fast, accurate, and reference-free tool to deconvolve and annotate spatially distributed omics data. Thuilliez C; Moquin-Beaudry G; Khneisser P; Marques Da Costa ME; Karkar S; Boudhouche H; Drubay D; Audinot B; Geoerger B; Scoazec JY; Gaspar N; Marchais A Bioinform Adv; 2024; 4(1):vbae081. PubMed ID: 38915885 [TBL] [Abstract][Full Text] [Related]
24. MACA: marker-based automatic cell-type annotation for single-cell expression data. Xu Y; Baumgart SJ; Stegmann CM; Hayat S Bioinformatics; 2022 Mar; 38(6):1756-1760. PubMed ID: 34935911 [TBL] [Abstract][Full Text] [Related]
25. Benchmarking and integration of methods for deconvoluting spatial transcriptomic data. Yan L; Sun X Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36515467 [TBL] [Abstract][Full Text] [Related]
26. DestVI identifies continuums of cell types in spatial transcriptomics data. Lopez R; Li B; Keren-Shaul H; Boyeau P; Kedmi M; Pilzer D; Jelinski A; Yofe I; David E; Wagner A; Ergen C; Addadi Y; Golani O; Ronchese F; Jordan MI; Amit I; Yosef N Nat Biotechnol; 2022 Sep; 40(9):1360-1369. PubMed ID: 35449415 [TBL] [Abstract][Full Text] [Related]
27. SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics. Swain AK; Pandit V; Sharma J; Yadav P Commun Biol; 2024 May; 7(1):639. PubMed ID: 38796505 [TBL] [Abstract][Full Text] [Related]
28. Impeller: a path-based heterogeneous graph learning method for spatial transcriptomic data imputation. Duan Z; Riffle D; Li R; Liu J; Min MR; Zhang J Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38806165 [TBL] [Abstract][Full Text] [Related]
29. vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level. Zhang C; Wang H; Chung Y; Hong SH; Olmer M; Swahn H; Lotz M; Maye P; Rowe D; Shin DG Bioinformatics; 2024 Oct; 40(10):. PubMed ID: 39363499 [TBL] [Abstract][Full Text] [Related]
30. Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning. Laubscher E; Wang X; Razin N; Dougherty T; Xu RJ; Ombelets L; Pao E; Graf W; Moffitt JR; Yue Y; Van Valen D Cell Syst; 2024 May; 15(5):475-482.e6. PubMed ID: 38754367 [TBL] [Abstract][Full Text] [Related]
31. scPLAN: a hierarchical computational framework for single transcriptomics data annotation, integration and cell-type label refinement. Guo Q; Yuan M; Zhang L; Deng M Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38935069 [TBL] [Abstract][Full Text] [Related]
32. A point cloud segmentation framework for image-based spatial transcriptomics. Defard T; Laporte H; Ayan M; Soulier J; Curras-Alonso S; Weber C; Massip F; Londoño-Vallejo JA; Fouillade C; Mueller F; Walter T Commun Biol; 2024 Jul; 7(1):823. PubMed ID: 38971915 [TBL] [Abstract][Full Text] [Related]
33. De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution. Liao J; Qian J; Fang Y; Chen Z; Zhuang X; Zhang N; Shao X; Hu Y; Yang P; Cheng J; Hu Y; Yu L; Yang H; Zhang J; Lu X; Shao L; Wu D; Gao Y; Chen H; Fan X Nat Commun; 2022 Oct; 13(1):6498. PubMed ID: 36310179 [TBL] [Abstract][Full Text] [Related]
34. STRIDE: accurately decomposing and integrating spatial transcriptomics using single-cell RNA sequencing. Sun D; Liu Z; Li T; Wu Q; Wang C Nucleic Acids Res; 2022 Apr; 50(7):e42. PubMed ID: 35253896 [TBL] [Abstract][Full Text] [Related]
35. STdGCN: spatial transcriptomic cell-type deconvolution using graph convolutional networks. Li Y; Luo Y Genome Biol; 2024 Aug; 25(1):206. PubMed ID: 39103939 [TBL] [Abstract][Full Text] [Related]
36. SpatialOne: end-to-end analysis of visium data at scale. Kamel M; Sarangi A; Senin P; Villordo S; Sunaal M; Barot H; Wang S; Solbas A; Cano L; Classe M; Bar-Joseph Z; Pla Planas A Bioinformatics; 2024 Sep; 40(9):. PubMed ID: 39152991 [TBL] [Abstract][Full Text] [Related]
37. Continually adapting pre-trained language model to universal annotation of single-cell RNA-seq data. Wan H; Yuan M; Fu Y; Deng M Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38388681 [TBL] [Abstract][Full Text] [Related]
38. Hidden Markov random field models for cell-type assignment of spatially resolved transcriptomics. Zhong C; Tian T; Wei Z Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37944045 [TBL] [Abstract][Full Text] [Related]
39. Integrating spatial transcriptomics and bulk RNA-seq: predicting gene expression with enhanced resolution through graph attention networks. Baul S; Tanvir Ahmed K; Jiang Q; Wang G; Li Q; Yong J; Zhang W Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38960406 [TBL] [Abstract][Full Text] [Related]
40. ST Pipeline: an automated pipeline for spatial mapping of unique transcripts. Navarro JF; Sjöstrand J; Salmén F; Lundeberg J; Ståhl PL Bioinformatics; 2017 Aug; 33(16):2591-2593. PubMed ID: 28398467 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]