119 related articles for article (PubMed ID: 38940166)
1. A machine-learning-based alternative to phylogenetic bootstrap.
Ecker N; Huchon D; Mansour Y; Mayrose I; Pupko T
Bioinformatics; 2024 Jun; 40(Supplement_1):i208-i217. PubMed ID: 38940166
[TBL] [Abstract][Full Text] [Related]
2. Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation.
Mar JC; Harlow TJ; Ragan MA
BMC Evol Biol; 2005 Jan; 5():8. PubMed ID: 15676079
[TBL] [Abstract][Full Text] [Related]
3. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
4. NetRAX: accurate and fast maximum likelihood phylogenetic network inference.
Lutteropp S; Scornavacca C; Kozlov AM; Morel B; Stamatakis A
Bioinformatics; 2022 Aug; 38(15):3725-3733. PubMed ID: 35713506
[TBL] [Abstract][Full Text] [Related]
5. Prediction of missing sequences and branch lengths in phylogenomic data.
Darriba D; Weiß M; Stamatakis A
Bioinformatics; 2016 May; 32(9):1331-7. PubMed ID: 26733454
[TBL] [Abstract][Full Text] [Related]
6. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
7. DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments.
Kelly S; Maini PK
PLoS One; 2013; 8(3):e58537. PubMed ID: 23554899
[TBL] [Abstract][Full Text] [Related]
8. MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation.
Hoang DT; Vinh LS; Flouri T; Stamatakis A; von Haeseler A; Minh BQ
BMC Evol Biol; 2018 Feb; 18(1):11. PubMed ID: 29390973
[TBL] [Abstract][Full Text] [Related]
9. Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
Hartmann S; Vision TJ
BMC Evol Biol; 2008 Mar; 8():95. PubMed ID: 18366758
[TBL] [Abstract][Full Text] [Related]
10. Fast multiple sequence alignment via multi-armed bandits.
Mazooji K; Shomorony I
Bioinformatics; 2024 Jun; 40(Supplement_1):i328-i336. PubMed ID: 38940160
[TBL] [Abstract][Full Text] [Related]
11. ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes.
Morel B; Kozlov AM; Stamatakis A
Bioinformatics; 2019 May; 35(10):1771-1773. PubMed ID: 30321303
[TBL] [Abstract][Full Text] [Related]
12. Robustness of Felsenstein's Versus Transfer Bootstrap Supports With Respect to Taxon Sampling.
Zaharias P; Lemoine F; Gascuel O
Syst Biol; 2023 Dec; 72(6):1280-1295. PubMed ID: 37756489
[TBL] [Abstract][Full Text] [Related]
13. STELLS2: fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies.
Pei J; Wu Y
Bioinformatics; 2017 Jun; 33(12):1789-1797. PubMed ID: 28186220
[TBL] [Abstract][Full Text] [Related]
14. GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss.
Morel B; Kozlov AM; Stamatakis A; Szöllősi GJ
Mol Biol Evol; 2020 Sep; 37(9):2763-2774. PubMed ID: 32502238
[TBL] [Abstract][Full Text] [Related]
15. RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.
Kozlov AM; Darriba D; Flouri T; Morel B; Stamatakis A
Bioinformatics; 2019 Nov; 35(21):4453-4455. PubMed ID: 31070718
[TBL] [Abstract][Full Text] [Related]
16. PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination.
Lücking R; Hodkinson BP; Stamatakis A; Cartwright RA
BMC Bioinformatics; 2011 Jan; 12():10. PubMed ID: 21214904
[TBL] [Abstract][Full Text] [Related]
17. Ultra-large alignments using phylogeny-aware profiles.
Nguyen NP; Mirarab S; Kumar K; Warnow T
Genome Biol; 2015 Jun; 16(1):124. PubMed ID: 26076734
[TBL] [Abstract][Full Text] [Related]
18. Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data.
Waddell PJ; Kishino H; Ota R
Genome Inform; 2002; 13():82-92. PubMed ID: 14571377
[TBL] [Abstract][Full Text] [Related]
19. PhyloNetworks: A Package for Phylogenetic Networks.
Solís-Lemus C; Bastide P; Ané C
Mol Biol Evol; 2017 Dec; 34(12):3292-3298. PubMed ID: 28961984
[TBL] [Abstract][Full Text] [Related]
20. Ultrafast approximation for phylogenetic bootstrap.
Minh BQ; Nguyen MA; von Haeseler A
Mol Biol Evol; 2013 May; 30(5):1188-95. PubMed ID: 23418397
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]