118 related articles for article (PubMed ID: 38940518)
1. Augmenting bacterial similarity measures using a graph-based genome representation.
Ramanan V; Sarkar IN
mSystems; 2024 Jun; ():e0049724. PubMed ID: 38940518
[TBL] [Abstract][Full Text] [Related]
2. Augmenting Bacterial Similarity Measures Using a Graph-Based Genome Representation.
Ramanan V; Sarkar IN
bioRxiv; 2024 Apr; ():. PubMed ID: 38645008
[TBL] [Abstract][Full Text] [Related]
3. Global genomic similarity and core genome sequence diversity of the
Barajas HR; Romero MF; Martínez-Sánchez S; Alcaraz LD
PeerJ; 2019; 6():e6233. PubMed ID: 30656069
[TBL] [Abstract][Full Text] [Related]
4. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
Schloss PD
mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
[TBL] [Abstract][Full Text] [Related]
5. How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
Rodriguez-R LM; Castro JC; Kyrpides NC; Cole JR; Tiedje JM; Konstantinidis KT
Appl Environ Microbiol; 2018 Mar; 84(6):. PubMed ID: 29305502
[TBL] [Abstract][Full Text] [Related]
6. Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales.
Guerrero G; Peralta H; Aguilar A; Díaz R; Villalobos MA; Medrano-Soto A; Mora J
BMC Evol Biol; 2005 Oct; 5():55. PubMed ID: 16229745
[TBL] [Abstract][Full Text] [Related]
7. Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs.
Zheng XH; Lu F; Wang ZY; Zhong F; Hoover J; Mural R
Bioinformatics; 2005 Mar; 21(6):703-10. PubMed ID: 15458983
[TBL] [Abstract][Full Text] [Related]
8.
Regueira-Iglesias A; Vázquez-González L; Balsa-Castro C; Blanco-Pintos T; Martín-Biedma B; Arce VM; Carreira MJ; Tomás I
Front Cell Infect Microbiol; 2021; 11():770668. PubMed ID: 35223533
[TBL] [Abstract][Full Text] [Related]
9. Integrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc.] and their syntenic relationships among closely related legumes.
Ho WK; Chai HH; Kendabie P; Ahmad NS; Jani J; Massawe F; Kilian A; Mayes S
BMC Genomics; 2017 Feb; 18(1):192. PubMed ID: 28219341
[TBL] [Abstract][Full Text] [Related]
10. SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand.
Tang H; Bomhoff MD; Briones E; Zhang L; Schnable JC; Lyons E
Genome Biol Evol; 2015 Nov; 7(12):3286-98. PubMed ID: 26560340
[TBL] [Abstract][Full Text] [Related]
11. Erratum: High-Throughput Identification of Resistance to Pseudomonas syringae pv. Tomato in Tomato using Seedling Flood Assay.
J Vis Exp; 2023 Oct; (200):. PubMed ID: 37851522
[TBL] [Abstract][Full Text] [Related]
12. Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants.
Gamboa-Tuz SD; Pereira-Santana A; Zhao T; Schranz ME
Methods Mol Biol; 2022; 2512():199-215. PubMed ID: 35818007
[TBL] [Abstract][Full Text] [Related]
13. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
Jung S; Main D; Staton M; Cho I; Zhebentyayeva T; Arús P; Abbott A
BMC Genomics; 2006 Apr; 7():81. PubMed ID: 16615871
[TBL] [Abstract][Full Text] [Related]
14. Screening synteny blocks in pairwise genome comparisons through integer programming.
Tang H; Lyons E; Pedersen B; Schnable JC; Paterson AH; Freeling M
BMC Bioinformatics; 2011 Apr; 12():102. PubMed ID: 21501495
[TBL] [Abstract][Full Text] [Related]
15. Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny.
Kobayashi Y; Kayamori A; Aoki K; Shiwa Y; Matsutani M; Fujita N; Sugita T; Iwasaki W; Tanaka N; Takashima M
BMC Genomics; 2023 Oct; 24(1):609. PubMed ID: 37821828
[TBL] [Abstract][Full Text] [Related]
16. Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification.
Ibal JC; Pham HQ; Park CE; Shin JH
PLoS One; 2019; 14(2):e0212090. PubMed ID: 30768621
[TBL] [Abstract][Full Text] [Related]
17. The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses.
Větrovský T; Baldrian P
PLoS One; 2013; 8(2):e57923. PubMed ID: 23460914
[TBL] [Abstract][Full Text] [Related]
18. Discovery of thermophilic Bacillales using reduced-representation genotyping for identification.
Talamantes-Becerra B; Carling J; Kilian A; Georges A
BMC Microbiol; 2020 May; 20(1):114. PubMed ID: 32404118
[TBL] [Abstract][Full Text] [Related]
19. An improved model for whole genome phylogenetic analysis by Fourier transform.
Yin C; Yau SS
J Theor Biol; 2015 Oct; 382():99-110. PubMed ID: 26151589
[TBL] [Abstract][Full Text] [Related]
20. EzBioCloud: a genome-driven database and platform for microbiome identification and discovery.
Chalita M; Kim YO; Park S; Oh HS; Cho JH; Moon J; Baek N; Moon C; Lee K; Yang J; Nam GG; Jung Y; Na SI; Bailey MJ; Chun J
Int J Syst Evol Microbiol; 2024 Jun; 74(6):. PubMed ID: 38888585
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]