These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

243 related articles for article (PubMed ID: 38951641)

  • 1. Mitochondrial genetics through the lens of single-cell multi-omics.
    Nitsch L; Lareau CA; Ludwig LS
    Nat Genet; 2024 Jul; 56(7):1355-1365. PubMed ID: 38951641
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics.
    Ludwig LS; Lareau CA; Ulirsch JC; Christian E; Muus C; Li LH; Pelka K; Ge W; Oren Y; Brack A; Law T; Rodman C; Chen JH; Boland GM; Hacohen N; Rozenblatt-Rosen O; Aryee MJ; Buenrostro JD; Regev A; Sankaran VG
    Cell; 2019 Mar; 176(6):1325-1339.e22. PubMed ID: 30827679
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mitochondrial single-cell ATAC-seq for high-throughput multi-omic detection of mitochondrial genotypes and chromatin accessibility.
    Lareau CA; Liu V; Muus C; Praktiknjo SD; Nitsch L; Kautz P; Sandor K; Yin Y; Gutierrez JC; Pelka K; Satpathy AT; Regev A; Sankaran VG; Ludwig LS
    Nat Protoc; 2023 May; 18(5):1416-1440. PubMed ID: 36792778
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identifying Somatic Mitochondrial DNA Mutations.
    An J; Min KI; Ju YS
    Methods Mol Biol; 2022; 2493():153-165. PubMed ID: 35751814
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GWAS and ExWAS of blood mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.
    Chong M; Mohammadi-Shemirani P; Perrot N; Nelson W; Morton R; Narula S; Lali R; Khan I; Khan M; Judge C; Machipisa T; Cawte N; O'Donnell M; Pigeyre M; Akhabir L; Paré G
    Elife; 2022 Jan; 11():. PubMed ID: 35023831
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome-wide mitochondrial DNA sequence variations and lower expression of OXPHOS genes predict mitochondrial dysfunction in oral cancer tissue.
    Chattopadhyay E; De Sarkar N; Singh R; Ray A; Roy R; Paul RR; Pal M; Ghose S; Ghosh S; Kabiraj D; Banerjee R; Roy B
    Tumour Biol; 2016 Sep; 37(9):11861-11871. PubMed ID: 27055661
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells.
    Lareau CA; Dubois SM; Buquicchio FA; Hsieh YH; Garg K; Kautz P; Nitsch L; Praktiknjo SD; Maschmeyer P; Verboon JM; Gutierrez JC; Yin Y; Fiskin E; Luo W; Mimitou EP; Muus C; Malhotra R; Parikh S; Fleming MD; Oevermann L; Schulte J; Eckert C; Kundaje A; Smibert P; Vardhana SA; Satpathy AT; Regev A; Sankaran VG; Agarwal S; Ludwig LS
    Nat Genet; 2023 Jul; 55(7):1198-1209. PubMed ID: 37386249
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Concomitant Sequencing of Accessible Chromatin and Mitochondrial Genomes in Single Cells Using mtscATAC-Seq.
    Ludwig LS; Lareau CA
    Methods Mol Biol; 2023; 2611():269-282. PubMed ID: 36807073
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes.
    Kim M; Gorelick AN; Vàzquez-García I; Williams MJ; Salehi S; Shi H; Weiner AC; Ceglia N; Funnell T; Park T; Boscenco S; O'Flanagan CH; Jiang H; Grewal D; Tang C; Rusk N; Gammage PA; McPherson A; Aparicio S; Shah SP; Reznik E
    Nat Genet; 2024 May; 56(5):889-899. PubMed ID: 38741018
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MtBrowse: An integrative genomics browser for human mitochondrial DNA.
    Singh V; Jolly B; Rajput NK; Pramanik S; Bhardwaj A
    Mitochondrion; 2019 Sep; 48():31-36. PubMed ID: 30738202
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Joint inference of cell lineage and mitochondrial evolution from single-cell sequencing data.
    Sashittal P; Chen V; Pasarkar A; Raphael BJ
    Bioinformatics; 2024 Jun; 40(Suppl 1):i218-i227. PubMed ID: 38940122
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The First Mitochondrial Genomics and Evolution SMBE-Satellite Meeting: A New Scientific Symbiosis.
    Ostersetzer-Biran O; Lane N; Pomiankowski A; Burton R; Arnqvist G; Filipovska A; Huchon D; Mishmar D
    Genome Biol Evol; 2017 Nov; 9(11):3054-3058. PubMed ID: 29106528
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging.
    Ridge PG; Maxwell TJ; Foutz SJ; Bailey MH; Corcoran CD; Tschanz JT; Norton MC; Munger RG; O'Brien E; Kerber RA; Cawthon RM; Kauwe JS
    BMC Bioinformatics; 2014; 15 Suppl 7(Suppl 7):S6. PubMed ID: 25077862
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Mitochondrial DNA Mutations as Natural Barcodes for Lineage Tracing of Murine Tumor Models.
    Penter L; Ten Hacken E; Southard J; Lareau CA; Ludwig LS; Li S; Neuberg DS; Livak KJ; Wu CJ
    Cancer Res; 2023 Mar; 83(5):667-672. PubMed ID: 36469010
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Approaches and challenges in identifying, quantifying, and manipulating dynamic mitochondrial genome variations.
    Li F; Xiang R; Liu Y; Hu G; Jiang Q; Jia T
    Cell Signal; 2024 May; 117():111123. PubMed ID: 38417637
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mitochondrial DNA is a major source of driver mutations in cancer.
    Kim M; Mahmood M; Reznik E; Gammage PA
    Trends Cancer; 2022 Dec; 8(12):1046-1059. PubMed ID: 36041967
    [TBL] [Abstract][Full Text] [Related]  

  • 17. mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets.
    Vellarikkal SK; Dhiman H; Joshi K; Hasija Y; Sivasubbu S; Scaria V
    Hum Mutat; 2015 Apr; 36(4):419-24. PubMed ID: 25677119
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mitochondrial DNA Alterations in Glioblastoma (GBM).
    Leão Barros MB; Pinheiro DDR; Borges BDN
    Int J Mol Sci; 2021 May; 22(11):. PubMed ID: 34072607
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Deciphering the spectrum of somatic mutations in the entire mitochondrial DNA genome.
    Chen XZ; Fang Y; Shi YH; Cui JH; Li LY; Xu YC; Ling B
    Genet Mol Res; 2015 Apr; 14(2):4331-7. PubMed ID: 25966205
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The complete mitochondrial genomes of two rice planthoppers, Nilaparvata lugens and Laodelphax striatellus: conserved genome rearrangement in Delphacidae and discovery of new characteristics of atp8 and tRNA genes.
    Zhang KJ; Zhu WC; Rong X; Zhang YK; Ding XL; Liu J; Chen DS; Du Y; Hong XY
    BMC Genomics; 2013 Jun; 14():417. PubMed ID: 23799924
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.