These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 38951915)

  • 1. CViewer: a Java-based statistical framework for integration of shotgun metagenomics with other omics datasets.
    Koci O; Russell RK; Shaikh MG; Edwards C; Gerasimidis K; Ijaz UZ
    Microbiome; 2024 Jun; 12(1):117. PubMed ID: 38951915
    [TBL] [Abstract][Full Text] [Related]  

  • 2. gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes.
    Arikan M; Muth T
    Gigascience; 2024 Jan; 13():. PubMed ID: 38995144
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights.
    Pasolli E; Truong DT; Malik F; Waldron L; Segata N
    PLoS Comput Biol; 2016 Jul; 12(7):e1004977. PubMed ID: 27400279
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C; Sadowsky MJ
    J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Gene-based microbiome representation enhances host phenotype classification.
    Deschênes T; Tohoundjona FWE; Plante PL; Di Marzo V; Raymond F
    mSystems; 2023 Aug; 8(4):e0053123. PubMed ID: 37404032
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox.
    Wirbel J; Zych K; Essex M; Karcher N; Kartal E; Salazar G; Bork P; Sunagawa S; Zeller G
    Genome Biol; 2021 Mar; 22(1):93. PubMed ID: 33785070
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Interactive Web-Based Services for Metagenomic Data Analysis and Comparisons.
    Abdelsalam NA; Elshora H; El-Hadidi M
    Methods Mol Biol; 2023; 2649():133-174. PubMed ID: 37258861
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data.
    Dhariwal A; Chong J; Habib S; King IL; Agellon LB; Xia J
    Nucleic Acids Res; 2017 Jul; 45(W1):W180-W188. PubMed ID: 28449106
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.
    Zhu Q; Huang S; Gonzalez A; McGrath I; McDonald D; Haiminen N; Armstrong G; Vázquez-Baeza Y; Yu J; Kuczynski J; Sepich-Poore GD; Swafford AD; Das P; Shaffer JP; Lejzerowicz F; Belda-Ferre P; Havulinna AS; Méric G; Niiranen T; Lahti L; Salomaa V; Kim HC; Jain M; Inouye M; Gilbert JA; Knight R
    mSystems; 2022 Apr; 7(2):e0016722. PubMed ID: 35369727
    [TBL] [Abstract][Full Text] [Related]  

  • 10. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks.
    Zhou Z; Tran PQ; Breister AM; Liu Y; Kieft K; Cowley ES; Karaoz U; Anantharaman K
    Microbiome; 2022 Feb; 10(1):33. PubMed ID: 35172890
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads.
    Nazeen S; Yu YW; Berger B
    Genome Biol; 2020 Feb; 21(1):47. PubMed ID: 32093762
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
    Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
    OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
    [TBL] [Abstract][Full Text] [Related]  

  • 13. DisBalance: a platform to automatically build balance-based disease prediction models and discover microbial biomarkers from microbiome data.
    Yang F; Zou Q
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33834198
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota.
    Olekhnovich EI; Vasilyev AT; Ulyantsev VI; Kostryukova ES; Tyakht AV
    Bioinformatics; 2018 Feb; 34(3):434-444. PubMed ID: 29092015
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics.
    Arikawa K; Ide K; Kogawa M; Saeki T; Yoda T; Endoh T; Matsuhashi A; Takeyama H; Hosokawa M
    Microbiome; 2021 Oct; 9(1):202. PubMed ID: 34641955
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Multiple Data Analyses and Statistical Approaches for Analyzing Data from Metagenomic Studies and Clinical Trials.
    Mitra S
    Methods Mol Biol; 2019; 1910():605-634. PubMed ID: 31278679
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Fizzy: feature subset selection for metagenomics.
    Ditzler G; Morrison JC; Lan Y; Rosen GL
    BMC Bioinformatics; 2015 Nov; 16():358. PubMed ID: 26538306
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses.
    Pérez-Cobas AE; Gomez-Valero L; Buchrieser C
    Microb Genom; 2020 Aug; 6(8):. PubMed ID: 32706331
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs.
    Brown SM; Chen H; Hao Y; Laungani BP; Ali TA; Dong C; Lijeron C; Kim B; Wultsch C; Pei Z; Krampis K
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30942867
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences.
    Mallick H; Franzosa EA; Mclver LJ; Banerjee S; Sirota-Madi A; Kostic AD; Clish CB; Vlamakis H; Xavier RJ; Huttenhower C
    Nat Commun; 2019 Jul; 10(1):3136. PubMed ID: 31316056
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.