These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 38956506)

  • 1. Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2.
    Miranda FM; Azevedo VC; Ramos RJ; Renard BY; Piro VC
    BMC Bioinformatics; 2024 Jul; 25(1):228. PubMed ID: 38956506
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MycoAI: Fast and accurate taxonomic classification for fungal ITS sequences.
    Romeijn L; Bernatavicius A; Vu D
    Mol Ecol Resour; 2024 Nov; 24(8):e14006. PubMed ID: 39152642
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mycofier: a new machine learning-based classifier for fungal ITS sequences.
    Delgado-Serrano L; Restrepo S; Bustos JR; Zambrano MM; Anzola JM
    BMC Res Notes; 2016 Aug; 9(1):402. PubMed ID: 27516337
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses.
    Fouquier J; Rideout JR; Bolyen E; Chase J; Shiffer A; McDonald D; Knight R; Caporaso JG; Kelley ST
    Microbiome; 2016 Feb; 4():11. PubMed ID: 26905735
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences.
    Gdanetz K; Benucci GMN; Vande Pol N; Bonito G
    BMC Bioinformatics; 2017 Dec; 18(1):538. PubMed ID: 29212440
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences.
    Deshpande V; Wang Q; Greenfield P; Charleston M; Porras-Alfaro A; Kuske CR; Cole JR; Midgley DJ; Tran-Dinh N
    Mycologia; 2016; 108(1):1-5. PubMed ID: 26553774
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.
    Bokulich NA; Kaehler BD; Rideout JR; Dillon M; Bolyen E; Knight R; Huttley GA; Gregory Caporaso J
    Microbiome; 2018 May; 6(1):90. PubMed ID: 29773078
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes.
    Liu KL; Porras-Alfaro A; Kuske CR; Eichorst SA; Xie G
    Appl Environ Microbiol; 2012 Mar; 78(5):1523-33. PubMed ID: 22194300
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protax-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences.
    Abarenkov K; Somervuo P; Nilsson RH; Kirk PM; Huotari T; Abrego N; Ovaskainen O
    New Phytol; 2018 Oct; 220(2):517-525. PubMed ID: 30035303
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units.
    Glassman SI; Martiny JBH
    mSphere; 2018 Jul; 3(4):. PubMed ID: 30021874
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene.
    Mota-Gutierrez J; Ferrocino I; Rantsiou K; Cocolin L
    Int J Food Microbiol; 2019 Feb; 290():132-140. PubMed ID: 30340111
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants.
    Tanabe AS; Toju H
    PLoS One; 2013; 8(10):e76910. PubMed ID: 24204702
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ensemble machine learning model trained on a new synthesized dataset generalizes well for stress prediction using wearable devices.
    Vos G; Trinh K; Sarnyai Z; Rahimi Azghadi M
    J Biomed Inform; 2023 Dec; 148():104556. PubMed ID: 38048895
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CNN_FunBar: Advanced Learning Technique for Fungi ITS Region Classification.
    Das R; Rai A; Mishra DC
    Genes (Basel); 2023 Mar; 14(3):. PubMed ID: 36980906
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Its2vec: Fungal Species Identification Using Sequence Embedding and Random Forest Classification.
    Wang C; Zhang Y; Han S
    Biomed Res Int; 2020; 2020():2468789. PubMed ID: 32566672
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.
    Schoch CL; Seifert KA; Huhndorf S; Robert V; Spouge JL; Levesque CA; Chen W; ;
    Proc Natl Acad Sci U S A; 2012 Apr; 109(16):6241-6. PubMed ID: 22454494
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing.
    Taylor DL; Walters WA; Lennon NJ; Bochicchio J; Krohn A; Caporaso JG; Pennanen T
    Appl Environ Microbiol; 2016 Dec; 82(24):7217-7226. PubMed ID: 27736792
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CONSTAX2: improved taxonomic classification of environmental DNA markers.
    Liber JA; Bonito G; Benucci GMN
    Bioinformatics; 2021 Nov; 37(21):3941-3943. PubMed ID: 33961008
    [TBL] [Abstract][Full Text] [Related]  

  • 19. funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model.
    Meher PK; Sahu TK; Gahoi S; Tomar R; Rao AR
    BMC Genet; 2019 Jan; 20(1):2. PubMed ID: 30616524
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities.
    Větrovský T; Kolařík M; Žifčáková L; Zelenka T; Baldrian P
    Mol Ecol Resour; 2016 Mar; 16(2):388-401. PubMed ID: 26287723
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.