104 related articles for article (PubMed ID: 38965117)
1. The State-of-the-Art Overview to Application of Deep Learning in Accurate Protein Design and Structure Prediction.
Saharkhiz S; Mostafavi M; Birashk A; Karimian S; Khalilollah S; Jaferian S; Yazdani Y; Alipourfard I; Huh YS; Farani MR; Akhavan-Sigari R
Top Curr Chem (Cham); 2024 Jul; 382(3):23. PubMed ID: 38965117
[TBL] [Abstract][Full Text] [Related]
2. Protein Structure Prediction: Conventional and Deep Learning Perspectives.
Jisna VA; Jayaraj PB
Protein J; 2021 Aug; 40(4):522-544. PubMed ID: 34050498
[TBL] [Abstract][Full Text] [Related]
3. Advances in protein structure prediction and design.
Kuhlman B; Bradley P
Nat Rev Mol Cell Biol; 2019 Nov; 20(11):681-697. PubMed ID: 31417196
[TBL] [Abstract][Full Text] [Related]
4. DNSS2: Improved ab initio protein secondary structure prediction using advanced deep learning architectures.
Guo Z; Hou J; Cheng J
Proteins; 2021 Feb; 89(2):207-217. PubMed ID: 32893403
[TBL] [Abstract][Full Text] [Related]
5. Advancing Ligand Docking through Deep Learning: Challenges and Prospects in Virtual Screening.
Zhang X; Shen C; Zhang H; Kang Y; Hsieh CY; Hou T
Acc Chem Res; 2024 May; 57(10):1500-1509. PubMed ID: 38577892
[TBL] [Abstract][Full Text] [Related]
6. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.
Wang S; Sun S; Li Z; Zhang R; Xu J
PLoS Comput Biol; 2017 Jan; 13(1):e1005324. PubMed ID: 28056090
[TBL] [Abstract][Full Text] [Related]
7. Fast and accurate Ab Initio Protein structure prediction using deep learning potentials.
Pearce R; Li Y; Omenn GS; Zhang Y
PLoS Comput Biol; 2022 Sep; 18(9):e1010539. PubMed ID: 36112717
[TBL] [Abstract][Full Text] [Related]
8. Deep Learning-Based Advances in Protein Structure Prediction.
Pakhrin SC; Shrestha B; Adhikari B; Kc DB
Int J Mol Sci; 2021 May; 22(11):. PubMed ID: 34074028
[TBL] [Abstract][Full Text] [Related]
9. GeoPacker: A novel deep learning framework for protein side-chain modeling.
Liu J; Zhang C; Lai L
Protein Sci; 2022 Dec; 31(12):e4484. PubMed ID: 36309961
[TBL] [Abstract][Full Text] [Related]
10. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.
Hou J; Wu T; Cao R; Cheng J
Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027
[TBL] [Abstract][Full Text] [Related]
11. Protein remote homology detection and structural alignment using deep learning.
Hamamsy T; Morton JT; Blackwell R; Berenberg D; Carriero N; Gligorijevic V; Strauss CEM; Leman JK; Cho K; Bonneau R
Nat Biotechnol; 2024 Jun; 42(6):975-985. PubMed ID: 37679542
[TBL] [Abstract][Full Text] [Related]
12. Protein sequence-to-structure learning: Is this the end(-to-end revolution)?
Laine E; Eismann S; Elofsson A; Grudinin S
Proteins; 2021 Dec; 89(12):1770-1786. PubMed ID: 34519095
[TBL] [Abstract][Full Text] [Related]
13. Combination of deep neural network with attention mechanism enhances the explainability of protein contact prediction.
Chen C; Wu T; Guo Z; Cheng J
Proteins; 2021 Jun; 89(6):697-707. PubMed ID: 33538038
[TBL] [Abstract][Full Text] [Related]
14. PYTHIA: Deep Learning Approach for Local Protein Conformation Prediction.
Cretin G; Galochkina T; de Brevern AG; Gelly JC
Int J Mol Sci; 2021 Aug; 22(16):. PubMed ID: 34445537
[TBL] [Abstract][Full Text] [Related]
15. Template-based prediction of protein structure with deep learning.
Zhang H; Shen Y
BMC Genomics; 2020 Dec; 21(Suppl 11):878. PubMed ID: 33372607
[TBL] [Abstract][Full Text] [Related]
16. New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance Prediction.
Barger J; Adhikari B
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(6):3586-3594. PubMed ID: 34559660
[TBL] [Abstract][Full Text] [Related]
17. Protein Residue Contacts and Prediction Methods.
Adhikari B; Cheng J
Methods Mol Biol; 2016; 1415():463-76. PubMed ID: 27115648
[TBL] [Abstract][Full Text] [Related]
18. Flattening the curve-How to get better results with small deep-mutational-scanning datasets.
Wirnsberger G; PritiĊĦanac I; Oberdorfer G; Gruber K
Proteins; 2024 Jul; 92(7):886-902. PubMed ID: 38501649
[TBL] [Abstract][Full Text] [Related]
19. Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps.
Si D; Moritz SA; Pfab J; Hou J; Cao R; Wang L; Wu T; Cheng J
Sci Rep; 2020 Mar; 10(1):4282. PubMed ID: 32152330
[TBL] [Abstract][Full Text] [Related]
20. [Advances in the application of AlphaFold2: a protein structure prediction model].
Zhang H; Wang H; Lu R; Lan J; Chen L; He X
Sheng Wu Gong Cheng Xue Bao; 2024 May; 40(5):1406-1420. PubMed ID: 38783805
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
