These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

105 related articles for article (PubMed ID: 38966974)

  • 1. [Microbial metaproteomics--From sample processing to data acquisition and analysis].
    Wu EH; Qiao L
    Se Pu; 2024 Jul; 42(7):658-668. PubMed ID: 38966974
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics.
    Wu E; Mallawaarachchi V; Zhao J; Yang Y; Liu H; Wang X; Shen C; Lin Y; Qiao L
    Microbiome; 2024 Mar; 12(1):58. PubMed ID: 38504332
    [TBL] [Abstract][Full Text] [Related]  

  • 3. High-Abundance Protein-Guided Hybrid Spectral Library for Data-Independent Acquisition Metaproteomics.
    Wu E; Yang Y; Zhao J; Zheng J; Wang X; Shen C; Qiao L
    Anal Chem; 2024 Jan; 96(3):1029-1037. PubMed ID: 38180447
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome.
    Lee EM; Srinivasan S; Purvine SO; Fiedler TL; Leiser OP; Proll SC; Minot SS; Deatherage Kaiser BL; Fredricks DN
    mSystems; 2023 Aug; 8(4):e0067822. PubMed ID: 37350639
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota-Implementation and Computational Analysis.
    Aakko J; Pietilä S; Suomi T; Mahmoudian M; Toivonen R; Kouvonen P; Rokka A; Hänninen A; Elo LL
    J Proteome Res; 2020 Jan; 19(1):432-436. PubMed ID: 31755272
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Metagenomic Taxonomy-Guided Database-Searching Strategy for Improving Metaproteomic Analysis.
    Xiao J; Tanca A; Jia B; Yang R; Wang B; Zhang Y; Li J
    J Proteome Res; 2018 Apr; 17(4):1596-1605. PubMed ID: 29436230
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Increasing taxonomic and functional characterization of host-microbiome interactions by DIA-PASEF metaproteomics.
    Gómez-Varela D; Xian F; Grundtner S; Sondermann JR; Carta G; Schmidt M
    Front Microbiol; 2023; 14():1258703. PubMed ID: 37908546
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics.
    Lohmann P; Schäpe SS; Haange SB; Oliphant K; Allen-Vercoe E; Jehmlich N; Von Bergen M
    Expert Rev Proteomics; 2020 Feb; 17(2):163-173. PubMed ID: 32174200
    [No Abstract]   [Full Text] [Related]  

  • 9. MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota.
    Zhang X; Ning Z; Mayne J; Moore JI; Li J; Butcher J; Deeke SA; Chen R; Chiang CK; Wen M; Mack D; Stintzi A; Figeys D
    Microbiome; 2016 Jun; 4(1):31. PubMed ID: 27343061
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bioinformatic Workflows for Metaproteomics.
    Holstein T; Muth T
    Methods Mol Biol; 2024; 2820():187-213. PubMed ID: 38941024
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Soil Metaproteomics for Microbial Community Profiling: Methodologies and Challenges.
    Pan H; Wattiez R; Gillan D
    Curr Microbiol; 2024 Jul; 81(8):257. PubMed ID: 38955825
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.
    Abraham PE; Giannone RJ; Xiong W; Hettich RL
    Curr Protoc Bioinformatics; 2014 Jun; 46():13.26.1-13.26.14. PubMed ID: 24939130
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Database selection for shotgun metaproteomic of low-diversity dairy microbiomes.
    da Silva Duarte V; de Paula Dias Moreira L; Skeie SB; Svalestad F; Øyaas J; Porcellato D
    Int J Food Microbiol; 2024 Jun; 418():110706. PubMed ID: 38696985
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Introducing untargeted data-independent acquisition for metaproteomics of complex microbial samples.
    Pietilä S; Suomi T; Elo LL
    ISME Commun; 2022 Jun; 2(1):51. PubMed ID: 37938742
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Metaproteomics of the human gut microbiota: Challenges and contributions to other OMICS.
    Issa Isaac N; Philippe D; Nicholas A; Raoult D; Eric C
    Clin Mass Spectrom; 2019 Sep; 14 Pt A():18-30. PubMed ID: 34917758
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets.
    Potgieter MG; Nel AJM; Fortuin S; Garnett S; Wendoh JM; Tabb DL; Mulder NJ; Blackburn JM
    PLoS Comput Biol; 2023 Jun; 19(6):e1011163. PubMed ID: 37327214
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Marine metaproteomics: current status and future directions.
    Wang DZ; Xie ZX; Zhang SF
    J Proteomics; 2014 Jan; 97():27-35. PubMed ID: 24041543
    [TBL] [Abstract][Full Text] [Related]  

  • 18. metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering.
    Hao C; Elias JE; Lee PKH; Lam H
    Microbiome; 2023 Aug; 11(1):176. PubMed ID: 37550758
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Increasing the power of interpretation for soil metaproteomics data.
    Jouffret V; Miotello G; Culotta K; Ayrault S; Pible O; Armengaud J
    Microbiome; 2021 Sep; 9(1):195. PubMed ID: 34587999
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MetaLab: an automated pipeline for metaproteomic data analysis.
    Cheng K; Ning Z; Zhang X; Li L; Liao B; Mayne J; Stintzi A; Figeys D
    Microbiome; 2017 Dec; 5(1):157. PubMed ID: 29197424
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.