These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

175 related articles for article (PubMed ID: 38980053)

  • 21. Benchmarking short-, long- and hybrid-read assemblers for metagenome sequencing of complex microbial communities.
    Goussarov G; Mysara M; Cleenwerck I; Claesen J; Leys N; Vandamme P; Van Houdt R
    Microbiology (Reading); 2024 Jun; 170(6):. PubMed ID: 38916949
    [TBL] [Abstract][Full Text] [Related]  

  • 22. CAIM: coverage-based analysis for identification of microbiome.
    Acheampong DA; Jenjaroenpun P; Wongsurawat T; Kurilung A; Pomyen Y; Kandel S; Kunadirek P; Chuaypen N; Kusonmano K; Nookaew I
    Brief Bioinform; 2024 Jul; 25(5):. PubMed ID: 39222062
    [TBL] [Abstract][Full Text] [Related]  

  • 23. MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies.
    Zachariasen T; Russel J; Petersen C; Vestergaard GA; Shah S; Atienza Lopez P; Passali M; Turvey SE; Sørensen SJ; Lund O; Stokholm J; Brejnrod A; Thorsen J
    Nat Commun; 2024 Jul; 15(1):5734. PubMed ID: 38977664
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Intrinsic correlation of oligonucleotides: a novel genomic signature for metagenome analysis.
    Ding X; Cao CC; Sun X
    J Theor Biol; 2014 Jul; 353():9-18. PubMed ID: 24631045
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
    Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
    BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
    [TBL] [Abstract][Full Text] [Related]  

  • 26. MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.
    Uritskiy GV; DiRuggiero J; Taylor J
    Microbiome; 2018 Sep; 6(1):158. PubMed ID: 30219103
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Guild-level signature of gut microbiome for diabetic kidney disease.
    Tang S; Wu G; Liu Y; Xue B; Zhang S; Zhang W; Jia Y; Xie Q; Liang C; Wang L; Heng H; Wei W; Shi X; Hu Y; Yang J; Zhao L; Wang X; Zhao L; Yuan H
    mBio; 2024 Jul; 15(7):e0073524. PubMed ID: 38819146
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome.
    Chen C; Zhou Y; Fu H; Xiong X; Fang S; Jiang H; Wu J; Yang H; Gao J; Huang L
    Nat Commun; 2021 Feb; 12(1):1106. PubMed ID: 33597514
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Modeling the limits of detection for antimicrobial resistance genes in agri-food samples: a comparative analysis of bioinformatics tools.
    Cooper AL; Low A; Wong A; Tamber S; Blais BW; Carrillo CD
    BMC Microbiol; 2024 Jan; 24(1):31. PubMed ID: 38245666
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Binning unassembled short reads based on k-mer abundance covariance using sparse coding.
    Kyrgyzov O; Prost V; Gazut S; Farcy B; Brüls T
    Gigascience; 2020 Apr; 9(4):. PubMed ID: 32219339
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
    Rotimi AM; Pierneef R; Reva ON
    BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Binning metagenomic contigs by coverage and composition.
    Alneberg J; Bjarnason BS; de Bruijn I; Schirmer M; Quick J; Ijaz UZ; Lahti L; Loman NJ; Andersson AF; Quince C
    Nat Methods; 2014 Nov; 11(11):1144-6. PubMed ID: 25218180
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota.
    Foutel-Rodier T; Thierry A; Koszul R; Marbouty M
    Methods Enzymol; 2018; 612():183-195. PubMed ID: 30502941
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Comparison of Fecal Collection Methods on Variation in Gut Metagenomics and Untargeted Metabolomics.
    Guan H; Pu Y; Liu C; Lou T; Tan S; Kong M; Sun Z; Mei Z; Qi Q; Quan Z; Zhao G; Zheng Y
    mSphere; 2021 Oct; 6(5):e0063621. PubMed ID: 34523982
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Sketching and sampling approaches for fast and accurate long read classification.
    Das A; Schatz MC
    BMC Bioinformatics; 2022 Oct; 23(1):452. PubMed ID: 36316646
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Advances in computational analysis of metagenome sequences.
    Davenport CF; Tümmler B
    Environ Microbiol; 2013 Jan; 15(1):1-5. PubMed ID: 22882611
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Genome-resolved metagenomics: a game changer for microbiome medicine.
    Kim N; Ma J; Kim W; Kim J; Belenky P; Lee I
    Exp Mol Med; 2024 Jul; 56(7):1501-1512. PubMed ID: 38945961
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands.
    Maguire F; Jia B; Gray KL; Lau WYV; Beiko RG; Brinkman FSL
    Microb Genom; 2020 Oct; 6(10):. PubMed ID: 33001022
    [TBL] [Abstract][Full Text] [Related]  

  • 40. An Expanded Gene Catalog of Mouse Gut Metagenomes.
    Zhu J; Ren H; Zhong H; Li X; Zou Y; Han M; Li M; Madsen L; Kristiansen K; Xiao L
    mSphere; 2021 Feb; 6(1):. PubMed ID: 33627510
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.