These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images. Hu T; Xu S; Wei L; Zhang X; Wang X Bioinformatics; 2021 Apr; 37(2):285-287. PubMed ID: 33416830 [TBL] [Abstract][Full Text] [Related]
5. Leaf-GP: an open and automated software application for measuring growth phenotypes for arabidopsis and wheat. Zhou J; Applegate C; Alonso AD; Reynolds D; Orford S; Mackiewicz M; Griffiths S; Penfield S; Pullen N Plant Methods; 2017; 13():117. PubMed ID: 29299051 [TBL] [Abstract][Full Text] [Related]
6. aCLImatise: automated generation of tool definitions for bioinformatics workflows. Milton M; Thorne N Bioinformatics; 2021 Apr; 36(22-23):5556-5557. PubMed ID: 33325479 [TBL] [Abstract][Full Text] [Related]
7. Analysing high-throughput sequencing data in Python with HTSeq 2.0. Putri GH; Anders S; Pyl PT; Pimanda JE; Zanini F Bioinformatics; 2022 May; 38(10):2943-2945. PubMed ID: 35561197 [TBL] [Abstract][Full Text] [Related]
8. NucliTrack: an integrated nuclei tracking application. Cooper S; Barr AR; Glen R; Bakal C Bioinformatics; 2017 Oct; 33(20):3320-3322. PubMed ID: 28637183 [TBL] [Abstract][Full Text] [Related]
9. Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR. Muhlich JL; Chen YA; Yapp C; Russell D; Santagata S; Sorger PK Bioinformatics; 2022 Sep; 38(19):4613-4621. PubMed ID: 35972352 [TBL] [Abstract][Full Text] [Related]
10. YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells. Lu AX; Zarin T; Hsu IS; Moses AM Bioinformatics; 2019 Nov; 35(21):4525-4527. PubMed ID: 31095270 [TBL] [Abstract][Full Text] [Related]
11. VisuStatR: visualizing motility and morphology statistics on images in R. Harmel C; Sid Ahmed S; Koch R; Tünnermann J; Distler T; Imle A; Giorgetti L; Bahn E; Fackler OT; Graw F Bioinformatics; 2022 May; 38(10):2970-2972. PubMed ID: 35561161 [TBL] [Abstract][Full Text] [Related]
12. pystablemotifs: Python library for attractor identification and control in Boolean networks. Rozum JC; Deritei D; Park KH; Gómez Tejeda Zañudo J; Albert R Bioinformatics; 2022 Feb; 38(5):1465-1466. PubMed ID: 34875008 [TBL] [Abstract][Full Text] [Related]
13. STrack: A Tool to Simply Track Bacterial Cells in Microscopy Time-Lapse Images. Todorov H; Miguel Trabajo T; van der Meer JR mSphere; 2023 Apr; 8(2):e0065822. PubMed ID: 36939355 [TBL] [Abstract][Full Text] [Related]
14. scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data. Faure L; Soldatov R; Kharchenko PV; Adameyko I Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394263 [TBL] [Abstract][Full Text] [Related]
20. PMAnalyzer: a new web interface for bacterial growth curve analysis. Cuevas DA; Edwards RA Bioinformatics; 2017 Jun; 33(12):1905-1906. PubMed ID: 28200078 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]