These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
118 related articles for article (PubMed ID: 39008464)
1. Puzzle Hi-C: An accurate scaffolding software. Lin G; Huang Z; Yue T; Chai J; Li Y; Yang H; Qin W; Yang G; Murphy RW; Zhang YP; Zhang Z; Zhou W; Luo J PLoS One; 2024; 19(7):e0298564. PubMed ID: 39008464 [TBL] [Abstract][Full Text] [Related]
2. EndHiC: assemble large contigs into chromosome-level scaffolds using the Hi-C links from contig ends. Wang S; Wang H; Jiang F; Wang A; Liu H; Zhao H; Yang B; Xu D; Zhang Y; Fan W BMC Bioinformatics; 2022 Dec; 23(1):528. PubMed ID: 36482318 [TBL] [Abstract][Full Text] [Related]
3. HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C. Nakabayashi R; Morishita S Bioinformatics; 2020 Jul; 36(13):3966-3974. PubMed ID: 32369554 [TBL] [Abstract][Full Text] [Related]
12. Scaffolding of long read assemblies using long range contact information. Ghurye J; Pop M; Koren S; Bickhart D; Chin CS BMC Genomics; 2017 Jul; 18(1):527. PubMed ID: 28701198 [TBL] [Abstract][Full Text] [Related]
13. Improvement of the Threespine Stickleback Genome Using a Hi-C-Based Proximity-Guided Assembly. Peichel CL; Sullivan ST; Liachko I; White MA J Hered; 2017 Sep; 108(6):693-700. PubMed ID: 28821183 [TBL] [Abstract][Full Text] [Related]
14. SLR: a scaffolding algorithm based on long reads and contig classification. Luo J; Lyu M; Chen R; Zhang X; Luo H; Yan C BMC Bioinformatics; 2019 Oct; 20(1):539. PubMed ID: 31666010 [TBL] [Abstract][Full Text] [Related]