These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 39012607)

  • 21. Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.
    Prezza N; Vezzi F; Käller M; Policriti A
    BMC Bioinformatics; 2016 Mar; 17 Suppl 4(Suppl 4):69. PubMed ID: 26961371
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing.
    Zhou L; Ng HK; Drautz-Moses DI; Schuster SC; Beck S; Kim C; Chambers JC; Loh M
    Sci Rep; 2019 Jul; 9(1):10383. PubMed ID: 31316107
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.
    Toh H; Shirane K; Miura F; Kubo N; Ichiyanagi K; Hayashi K; Saitou M; Suyama M; Ito T; Sasaki H
    BMC Genomics; 2017 Jan; 18(1):31. PubMed ID: 28056787
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Method for Bisulfite Sequencing Data Analysis for Whole-Genome Level DNA Methylation Detection in Legumes.
    Gupta K; Garg R
    Methods Mol Biol; 2020; 2107():127-145. PubMed ID: 31893445
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Generation of Whole Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis.
    Vargas-Landin DB; Pflüger J; Lister R
    Methods Mol Biol; 2018; 1767():291-298. PubMed ID: 29524142
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Methodological aspects of whole-genome bisulfite sequencing analysis.
    Adusumalli S; Mohd Omar MF; Soong R; Benoukraf T
    Brief Bioinform; 2015 May; 16(3):369-79. PubMed ID: 24867940
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data.
    Shahryary Y; Hazarika RR; Johannes F
    BMC Genomics; 2020 Jul; 21(1):479. PubMed ID: 32660416
    [TBL] [Abstract][Full Text] [Related]  

  • 28. CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data.
    Su J; Yan H; Wei Y; Liu H; Liu H; Wang F; Lv J; Wu Q; Zhang Y
    Nucleic Acids Res; 2013 Jan; 41(1):e4. PubMed ID: 22941633
    [TBL] [Abstract][Full Text] [Related]  

  • 29. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
    Guo W; Fiziev P; Yan W; Cokus S; Sun X; Zhang MQ; Chen PY; Pellegrini M
    BMC Genomics; 2013 Nov; 14():774. PubMed ID: 24206606
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Computational Analysis of Genome-Wide ARGONAUTE-Dependent DNA Methylation in Plants.
    Tang K; Duan CG; Zhang H; Zhu JK
    Methods Mol Biol; 2017; 1640():219-225. PubMed ID: 28608346
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A new approach to decode DNA methylome and genomic variants simultaneously from double strand bisulfite sequencing.
    Liang J; Zhang K; Yang J; Li X; Li Q; Wang Y; Cai W; Teng H; Sun Z
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34058751
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Beyond the base pairs: comparative genome-wide DNA methylation profiling across sequencing technologies.
    Liu X; Pang Y; Shan J; Wang Y; Zheng Y; Xue Y; Zhou X; Wang W; Sun Y; Yan X; Shi J; Wang X; Gu H; Zhang F
    Brief Bioinform; 2024 Jul; 25(5):. PubMed ID: 39256199
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Generation of Whole Genome Bisulfite Sequencing Libraries from Very Low DNA Input.
    Weichenhan D; Imbusch CD; Wang Q; Brors B; Plass C
    Methods Mol Biol; 2019; 1956():229-248. PubMed ID: 30779037
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Tagmentation-based whole-genome bisulfite sequencing.
    Wang Q; Gu L; Adey A; Radlwimmer B; Wang W; Hovestadt V; Bähr M; Wolf S; Shendure J; Eils R; Plass C; Weichenhan D
    Nat Protoc; 2013 Oct; 8(10):2022-32. PubMed ID: 24071908
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data.
    Scott CA; Duryea JD; MacKay H; Baker MS; Laritsky E; Gunasekara CJ; Coarfa C; Waterland RA
    Genome Biol; 2020 Jul; 21(1):156. PubMed ID: 32605651
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Targeted Bisulfite Sequencing Using the SeqCap Epi Enrichment System.
    Wendt J; Rosenbaum H; Richmond TA; Jeddeloh JA; Burgess DL
    Methods Mol Biol; 2018; 1708():383-405. PubMed ID: 29224155
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Tagmentation-Based Library Preparation for Low DNA Input Whole Genome Bisulfite Sequencing.
    Weichenhan D; Wang Q; Adey A; Wolf S; Shendure J; Eils R; Plass C
    Methods Mol Biol; 2018; 1708():105-122. PubMed ID: 29224141
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Analyzing the cancer methylome through targeted bisulfite sequencing.
    Lee EJ; Luo J; Wilson JM; Shi H
    Cancer Lett; 2013 Nov; 340(2):171-8. PubMed ID: 23200671
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Analysis of Plant DNA Methylation Profiles Using R.
    Catoni M; Zabet NR
    Methods Mol Biol; 2021; 2250():219-238. PubMed ID: 33900608
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Targeted DNA methylation analysis by next-generation sequencing.
    Masser DR; Stanford DR; Freeman WM
    J Vis Exp; 2015 Feb; (96):. PubMed ID: 25741966
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.