These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 39013164)

  • 1. WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data.
    Yang DT; Chong LT
    J Chem Inf Model; 2024 Aug; 64(15):5749-5755. PubMed ID: 39013164
    [TBL] [Abstract][Full Text] [Related]  

  • 2. WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data.
    Yang DT; Chong LT
    bioRxiv; 2024 May; ():. PubMed ID: 38826259
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MolDy: molecular dynamics simulation made easy.
    Khan MI; Pathania S; Al-Rabia MW; Ethayathulla AS; Khan MI; Allemailem KS; Azam M; Hariprasad G; Imran MA
    Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38867698
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Enabling grand-canonical Monte Carlo: extending the flexibility of GROMACS through the GromPy python interface module.
    Pool R; Heringa J; Hoefling M; Schulz R; Smith JC; Feenstra KA
    J Comput Chem; 2012 May; 33(12):1207-14. PubMed ID: 22370965
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS.
    Vieira IHP; Botelho EB; de Souza Gomes TJ; Kist R; Caceres RA; Zanchi FB
    BMC Bioinformatics; 2023 Mar; 24(1):107. PubMed ID: 36949402
    [TBL] [Abstract][Full Text] [Related]  

  • 6. WESTPA: an interoperable, highly scalable software package for weighted ensemble simulation and analysis.
    Zwier MC; Adelman JL; Kaus JW; Pratt AJ; Wong KF; Rego NB; Suárez E; Lettieri S; Wang DW; Grabe M; Zuckerman DM; Chong LT
    J Chem Theory Comput; 2015 Feb; 11(2):800-9. PubMed ID: 26392815
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GUIDEMOL: A Python graphical user interface for molecular descriptors based on RDKit.
    Aires-de-Sousa J
    Mol Inform; 2024 Jan; 43(1):e202300190. PubMed ID: 37885368
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MDBuilder: a PyMOL plugin for the preparation of molecular dynamics simulations.
    Liu H; Jin Y; Ding H
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36790845
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository.
    Smelter A; Moseley HNB
    Metabolomics; 2018; 14(5):64. PubMed ID: 29706851
    [TBL] [Abstract][Full Text] [Related]  

  • 10. pyGROMODS: a Python package for the generation of input files for molecular dynamic simulation with GROMACS.
    Daniyan MO
    J Biomol Struct Dyn; 2024 Sep; 42(14):7207-7220. PubMed ID: 37489036
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MD DaVis: interactive data visualization of protein molecular dynamics.
    Maity D; Pal D
    Bioinformatics; 2022 Jun; 38(12):3299-3301. PubMed ID: 35532115
    [TBL] [Abstract][Full Text] [Related]  

  • 12. JGromacs: a Java package for analyzing protein simulations.
    Münz M; Biggin PC
    J Chem Inf Model; 2012 Jan; 52(1):255-9. PubMed ID: 22191855
    [TBL] [Abstract][Full Text] [Related]  

  • 13. scDIOR: single cell RNA-seq data IO software.
    Feng H; Lin L; Chen J
    BMC Bioinformatics; 2022 Jan; 23(1):16. PubMed ID: 34991457
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ensembler: A Simple Package for Fast Prototyping and Teaching Molecular Simulations.
    Ries B; Linker SM; Hahn DF; König G; Riniker S
    J Chem Inf Model; 2021 Feb; 61(2):560-564. PubMed ID: 33512157
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Pycellerator: an arrow-based reaction-like modelling language for biological simulations.
    Shapiro BE; Mjolsness E
    Bioinformatics; 2016 Feb; 32(4):629-31. PubMed ID: 26504142
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
    Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
    Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
    [TBL] [Abstract][Full Text] [Related]  

  • 17. LiGRO: a graphical user interface for protein-ligand molecular dynamics.
    Kagami LP; das Neves GM; da Silva AWS; Caceres RA; Kawano DF; Eifler-Lima VL
    J Mol Model; 2017 Oct; 23(11):304. PubMed ID: 28980073
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RR-APET - Heart rate variability analysis software.
    McConnell M; Schwerin B; So S; Richards B
    Comput Methods Programs Biomed; 2020 Mar; 185():105127. PubMed ID: 31648100
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories.
    McGibbon RT; Beauchamp KA; Harrigan MP; Klein C; Swails JM; Hernández CX; Schwantes CR; Wang LP; Lane TJ; Pande VS
    Biophys J; 2015 Oct; 109(8):1528-32. PubMed ID: 26488642
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SimService: a lightweight library for building simulation services in Python.
    Sego TJ
    Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38237907
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.