These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

168 related articles for article (PubMed ID: 39021350)

  • 1. Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data.
    Thiel BC; Bussi G; Poblete S; Hofacker IL
    Nucleic Acids Res; 2024 Sep; 52(16):e73. PubMed ID: 39021350
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The Multiscale Ernwin/SPQR RNA Structure Prediction Pipeline.
    Thiel BC; Poblete S; Hofacker IL
    Methods Mol Biol; 2024; 2726():377-399. PubMed ID: 38780739
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNA structure determination using SAXS data.
    Yang S; Parisien M; Major F; Roux B
    J Phys Chem B; 2010 Aug; 114(31):10039-48. PubMed ID: 20684627
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles.
    Bernetti M; Hall KB; Bussi G
    Nucleic Acids Res; 2021 Aug; 49(14):e84. PubMed ID: 34107023
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Nucleic acid structure characterization by small angle X-ray scattering (SAXS).
    Burke JE; Butcher SE
    Curr Protoc Nucleic Acid Chem; 2012 Dec; Chapter 7():Unit7.18. PubMed ID: 23255205
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Small-angle X-ray scattering: a bridge between RNA secondary structures and three-dimensional topological structures.
    Fang X; Stagno JR; Bhandari YR; Zuo X; Wang YX
    Curr Opin Struct Biol; 2015 Feb; 30():147-160. PubMed ID: 25765781
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Deriving RNA topological structure from SAXS.
    Fang X; Gallego J; Wang YX
    Methods Enzymol; 2022; 677():479-529. PubMed ID: 36410961
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Time resolved SAXS and RNA folding.
    Pollack L
    Biopolymers; 2011 Aug; 95(8):543-9. PubMed ID: 21328311
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improving small-angle X-ray scattering data for structural analyses of the RNA world.
    Rambo RP; Tainer JA
    RNA; 2010 Mar; 16(3):638-46. PubMed ID: 20106957
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Modeling the structure of RNA molecules with small-angle X-ray scattering data.
    Gajda MJ; Martinez Zapien D; Uchikawa E; Dock-Bregeon AC
    PLoS One; 2013; 8(11):e78007. PubMed ID: 24223750
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fast-SAXS-pro: a unified approach to computing SAXS profiles of DNA, RNA, protein, and their complexes.
    Ravikumar KM; Huang W; Yang S
    J Chem Phys; 2013 Jan; 138(2):024112. PubMed ID: 23320673
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Riboswitch conformations revealed by small-angle X-ray scattering.
    Lipfert J; Herschlag D; Doniach S
    Methods Mol Biol; 2009; 540():141-59. PubMed ID: 19381558
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Methods for using new conceptual tools and parameters to assess RNA structure by small-angle X-ray scattering.
    Reyes FE; Schwartz CR; Tainer JA; Rambo RP
    Methods Enzymol; 2014; 549():235-63. PubMed ID: 25432752
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.
    Zheng W; Tekpinar M
    Biophys J; 2011 Dec; 101(12):2981-91. PubMed ID: 22208197
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Modeling RNA topological structures using small angle X-ray scattering.
    Bhandari YR; Jiang W; Stahlberg EA; Stagno JR; Wang YX
    Methods; 2016 Jul; 103():18-24. PubMed ID: 27090001
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Pepsi-SAXS: an adaptive method for rapid and accurate computation of small-angle X-ray scattering profiles.
    Grudinin S; Garkavenko M; Kazennov A
    Acta Crystallogr D Struct Biol; 2017 May; 73(Pt 5):449-464. PubMed ID: 28471369
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Hybrid Methods for Modeling Protein Structures Using Molecular Dynamics Simulations and Small-Angle X-Ray Scattering Data.
    Ekimoto T; Ikeguchi M
    Adv Exp Med Biol; 2018; 1105():237-258. PubMed ID: 30617833
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Combined Small-Angle X-ray and Neutron Scattering Restraints in Molecular Dynamics Simulations.
    Chen PC; Shevchuk R; Strnad FM; Lorenz C; Karge L; Gilles R; Stadler AM; Hennig J; Hub JS
    J Chem Theory Comput; 2019 Aug; 15(8):4687-4698. PubMed ID: 31251056
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Four steps for revealing and adjusting the 3D structure of aptamers in solution by small-angle X-ray scattering and computer simulation.
    Tomilin FN; Moryachkov R; Shchugoreva I; Zabluda VN; Peters G; Platunov M; Spiridonova V; Melnichuk A; Atrokhova A; Zamay SS; Ovchinnikov SG; Zamay GS; Sokolov A; Zamay TN; Berezovski MV; Kichkailo AS
    Anal Bioanal Chem; 2019 Oct; 411(25):6723-6732. PubMed ID: 31396648
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Determination of protein oligomeric structure from small-angle X-ray scattering.
    Korasick DA; Tanner JJ
    Protein Sci; 2018 Apr; 27(4):814-824. PubMed ID: 29352739
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.