These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

121 related articles for article (PubMed ID: 39036848)

  • 1. Gene representation bias in spatial transcriptomics.
    Li X; Qiu P
    J Bioinform Comput Biol; 2024 Jun; 22(3):2450007. PubMed ID: 39036848
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Gene representation in scRNA-seq is correlated with common motifs at the 3' end of transcripts.
    Li X; Gibson G; Qiu P
    Front Bioinform; 2023; 3():1120290. PubMed ID: 37255988
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comparative Methods for Demystifying Spatial Transcriptomics.
    Sammeth M; Mudra S; Bialdiga S; Hartmannsberger B; Kramer S; Rittner H
    Methods Mol Biol; 2024; 2802():515-546. PubMed ID: 38819570
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Tissue RNA Integrity in Visium Spatial Protocol (Fresh Frozen Samples).
    Antico F; Gai M; Arigoni M
    Methods Mol Biol; 2023; 2584():191-203. PubMed ID: 36495450
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing.
    Liu J; Tran V; Vemuri VNP; Byrne A; Borja M; Kim YJ; Agarwal S; Wang R; Awayan K; Murti A; Taychameekiatchai A; Wang B; Emanuel G; He J; Haliburton J; Oliveira Pisco A; Neff NF
    Life Sci Alliance; 2023 Jan; 6(1):. PubMed ID: 36526371
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A Comprehensive Survey of Statistical Approaches for Differential Expression Analysis in Single-Cell RNA Sequencing Studies.
    Das S; Rai A; Merchant ML; Cave MC; Rai SN
    Genes (Basel); 2021 Dec; 12(12):. PubMed ID: 34946896
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Integrating spatial transcriptomics and bulk RNA-seq: predicting gene expression with enhanced resolution through graph attention networks.
    Baul S; Tanvir Ahmed K; Jiang Q; Wang G; Li Q; Yong J; Zhang W
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38960406
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MustSeq, an alternative approach for multiplexible strand-specific 3' end sequencing of mRNA transcriptome confers high efficiency and practicality.
    Mai L; Qiu Y; Lian Z; Chen C; Wang L; Yin Y; Wang S; Yang X; Li Y; Peng W; Luo C; Pan X
    RNA Biol; 2021 Oct; 18(sup1):232-243. PubMed ID: 34586036
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Integration tools for scRNA-seq data and spatial transcriptomics sequencing data.
    Yan C; Zhu Y; Chen M; Yang K; Cui F; Zou Q; Zhang Z
    Brief Funct Genomics; 2024 Jul; 23(4):295-302. PubMed ID: 38267084
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RAP: A Web Tool for RNA-Seq Data Analysis.
    D'Antonio M; Libro P; Picardi E; Pesole G; Castrignanò T
    Methods Mol Biol; 2021; 2284():393-415. PubMed ID: 33835454
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Spatial Transcriptomics in Kidney Tissue.
    Raghubar AM; Crawford J; Jones K; Lam PY; Andersen SB; Matigian NA; Ng MSY; Healy H; Kassianos AJ; Mallett AJ
    Methods Mol Biol; 2023; 2664():233-282. PubMed ID: 37423994
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Single-Cell Transcriptomics of Immune Cells: Cell Isolation and cDNA Library Generation for scRNA-Seq.
    Arsenio J
    Methods Mol Biol; 2020; 2184():1-18. PubMed ID: 32808214
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data.
    Clark JZ; Chen L; Chou CL; Jung HJ; Lee JW; Knepper MA
    Kidney Int; 2019 Apr; 95(4):787-796. PubMed ID: 30826016
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Quantifying 3'UTR length from scRNA-seq data reveals changes independent of gene expression.
    Fansler MM; Mitschka S; Mayr C
    Nat Commun; 2024 May; 15(1):4050. PubMed ID: 38744866
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Using RNentropy to Detect Significant Variation in Gene Expression Across Multiple RNA-Seq or Single-Cell RNA-Seq Samples.
    Zambelli F; Pavesi G
    Methods Mol Biol; 2021; 2284():77-96. PubMed ID: 33835439
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry.
    Zhang Q; Jiang S; Schroeder A; Hu J; Li K; Zhang B; Dai D; Lee EB; Xiao R; Li M
    Nat Commun; 2023 Jul; 14(1):4050. PubMed ID: 37422469
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A comparison of mRNA sequencing (RNA-Seq) library preparation methods for transcriptome analysis.
    Ura H; Togi S; Niida Y
    BMC Genomics; 2022 Apr; 23(1):303. PubMed ID: 35418012
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion.
    Li Z; Song T; Yong J; Kuang R
    PLoS Comput Biol; 2021 Apr; 17(4):e1008218. PubMed ID: 33826608
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Recovery and analysis of transcriptome subsets from pooled single-cell RNA-seq libraries.
    Riemondy KA; Ransom M; Alderman C; Gillen AE; Fu R; Finlay-Schultz J; Kirkpatrick GD; Di Paola J; Kabos P; Sartorius CA; Hesselberth JR
    Nucleic Acids Res; 2019 Feb; 47(4):e20. PubMed ID: 30496484
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Single-Cell Capture, RNA-seq, and Transcriptome Analysis from the Neural Retina.
    Dharmat R; Kim S; Li Y; Chen R
    Methods Mol Biol; 2020; 2092():159-186. PubMed ID: 31786788
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.