These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. mobileOG-db: a Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements. Brown CL; Mullet J; Hindi F; Stoll JE; Gupta S; Choi M; Keenum I; Vikesland P; Pruden A; Zhang L Appl Environ Microbiol; 2022 Sep; 88(18):e0099122. PubMed ID: 36036594 [TBL] [Abstract][Full Text] [Related]
4. A Practical Guide for Comparative Genomics of Mobile Genetic Elements in Prokaryotic Genomes. Oliveira Alvarenga D; Moreira LM; Chandler M; Varani AM Methods Mol Biol; 2018; 1704():213-242. PubMed ID: 29277867 [TBL] [Abstract][Full Text] [Related]
12. A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea. Berthelier J; Casse N; Daccord N; Jamilloux V; Saint-Jean B; Carrier G BMC Genomics; 2018 May; 19(1):378. PubMed ID: 29783941 [TBL] [Abstract][Full Text] [Related]
13. TEnest 2.0: computational annotation and visualization of nested transposable elements. Kronmiller BA; Wise RP Methods Mol Biol; 2013; 1057():305-19. PubMed ID: 23918438 [TBL] [Abstract][Full Text] [Related]
14. DoriTool: A Bioinformatics Integrative Tool for Post-Association Functional Annotation. Martín-Antoniano I; Alonso L; Madrid M; López de Maturana E; Malats N Public Health Genomics; 2017; 20(2):126-135. PubMed ID: 28700989 [TBL] [Abstract][Full Text] [Related]
15. The Hypercomplex Genome of an Insect Reproductive Parasite Highlights the Importance of Lateral Gene Transfer in Symbiont Biology. Frost CL; Siozios S; Nadal-Jimenez P; Brockhurst MA; King KC; Darby AC; Hurst GDD mBio; 2020 Mar; 11(2):. PubMed ID: 32209690 [TBL] [Abstract][Full Text] [Related]
16. Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center. Wattam AR; Brettin T; Davis JJ; Gerdes S; Kenyon R; Machi D; Mao C; Olson R; Overbeek R; Pusch GD; Shukla MP; Stevens R; Vonstein V; Warren A; Xia F; Yoo H Methods Mol Biol; 2018; 1704():79-101. PubMed ID: 29277864 [TBL] [Abstract][Full Text] [Related]
17. Identification of mobile genetic elements with geNomad. Camargo AP; Roux S; Schulz F; Babinski M; Xu Y; Hu B; Chain PSG; Nayfach S; Kyrpides NC Nat Biotechnol; 2024 Aug; 42(8):1303-1312. PubMed ID: 37735266 [TBL] [Abstract][Full Text] [Related]
18. High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource. Seaver SM; Gerdes S; Frelin O; Lerma-Ortiz C; Bradbury LM; Zallot R; Hasnain G; Niehaus TD; El Yacoubi B; Pasternak S; Olson R; Pusch G; Overbeek R; Stevens R; de Crécy-Lagard V; Ware D; Hanson AD; Henry CS Proc Natl Acad Sci U S A; 2014 Jul; 111(26):9645-50. PubMed ID: 24927599 [TBL] [Abstract][Full Text] [Related]
19. BEACON: automated tool for Bacterial GEnome Annotation ComparisON. Kalkatawi M; Alam I; Bajic VB BMC Genomics; 2015 Aug; 16(1):616. PubMed ID: 26283419 [TBL] [Abstract][Full Text] [Related]