These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

134 related articles for article (PubMed ID: 39051702)

  • 1. SpatialQC: automated quality control for spatial transcriptome data.
    Mao G; Yang Y; Luo Z; Lin C; Xie P
    Bioinformatics; 2024 Aug; 40(8):. PubMed ID: 39051702
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization.
    Larsson L; Franzén L; Ståhl PL; Lundeberg J
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37846051
    [TBL] [Abstract][Full Text] [Related]  

  • 3. NanopoReaTA: a user-friendly tool for nanopore-seq real-time transcriptional analysis.
    Wierczeiko A; Pastore S; Mündnich S; Busch AM; Dietrich V; Helm M; Butto T; Gerber S
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37549052
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SpatialOne: end-to-end analysis of visium data at scale.
    Kamel M; Sarangi A; Senin P; Villordo S; Sunaal M; Barot H; Wang S; Solbas A; Cano L; Classe M; Bar-Joseph Z; Pla Planas A
    Bioinformatics; 2024 Sep; 40(9):. PubMed ID: 39152991
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SpatialView: an interactive web application for visualization of multiple samples in spatial transcriptomics experiments.
    Mohanty C; Prasad A; Cheng L; Arkin LM; Shields BE; Drolet B; Kendziorski C
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38444087
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SD2: spatially resolved transcriptomics deconvolution through integration of dropout and spatial information.
    Li H; Li H; Zhou J; Gao X
    Bioinformatics; 2022 Oct; 38(21):4878-4884. PubMed ID: 36063455
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SPRITE: improving spatial gene expression imputation with gene and cell networks.
    Sun ED; Ma R; Zou J
    Bioinformatics; 2024 Jun; 40(Suppl 1):i521-i528. PubMed ID: 38940132
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Impeller: a path-based heterogeneous graph learning method for spatial transcriptomic data imputation.
    Duan Z; Riffle D; Li R; Liu J; Min MR; Zhang J
    Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38806165
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Spage2vec: Unsupervised representation of localized spatial gene expression signatures.
    Partel G; Wählby C
    FEBS J; 2021 Mar; 288(6):1859-1870. PubMed ID: 32976679
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ST Pipeline: an automated pipeline for spatial mapping of unique transcripts.
    Navarro JF; Sjöstrand J; Salmén F; Lundeberg J; Ståhl PL
    Bioinformatics; 2017 Aug; 33(16):2591-2593. PubMed ID: 28398467
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Unravelling spatial gene associations with SEAGAL: a Python package for spatial transcriptomics data analysis and visualization.
    Wang L; Liu C; Gao Y; Zhang XH; Liu Z
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37436699
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DEVEA: an interactive shiny application for Differential Expression analysis, data Visualization and Enrichment Analysis of transcriptomics data.
    Riquelme-Perez M; Perez-Sanz F; Deleuze JF; Escartin C; Bonnet E; Brohard S
    F1000Res; 2022; 11():711. PubMed ID: 36999088
    [TBL] [Abstract][Full Text] [Related]  

  • 13. webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration.
    Zhang Z; Cui F; Su W; Dou L; Xu A; Cao C; Zou Q
    Bioinformatics; 2022 Jun; 38(13):3488-3489. PubMed ID: 35604082
    [TBL] [Abstract][Full Text] [Related]  

  • 14. stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics.
    Shengquan C; Boheng Z; Xiaoyang C; Xuegong Z; Rui J
    Bioinformatics; 2021 Jul; 37(Suppl_1):i299-i307. PubMed ID: 34252941
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CROST: a comprehensive repository of spatial transcriptomics.
    Wang G; Wu S; Xiong Z; Qu H; Fang X; Bao Y
    Nucleic Acids Res; 2024 Jan; 52(D1):D882-D890. PubMed ID: 37791883
    [TBL] [Abstract][Full Text] [Related]  

  • 16. hCoCena: horizontal integration and analysis of transcriptomics datasets.
    Oestreich M; Holsten L; Agrawal S; Dahm K; Koch P; Jin H; Becker M; Ulas T
    Bioinformatics; 2022 Oct; 38(20):4727-4734. PubMed ID: 36018233
    [TBL] [Abstract][Full Text] [Related]  

  • 17. popsicleR: A R Package for Pre-processing and Quality Control Analysis of Single Cell RNA-seq Data.
    Grandi F; Caroli J; Romano O; Marchionni M; Forcato M; Bicciato S
    J Mol Biol; 2022 Jun; 434(11):167560. PubMed ID: 35662457
    [TBL] [Abstract][Full Text] [Related]  

  • 18. NoVaTeST: identifying genes with location-dependent noise variance in spatial transcriptomics data.
    Abrar MA; Kaykobad M; Rahman MS; Samee MAH
    Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37285319
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.
    Qin Q; Mei S; Wu Q; Sun H; Li L; Taing L; Chen S; Li F; Liu T; Zang C; Xu H; Chen Y; Meyer CA; Zhang Y; Brown M; Long HW; Liu XS
    BMC Bioinformatics; 2016 Oct; 17(1):404. PubMed ID: 27716038
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MetaOmics: analysis pipeline and browser-based software suite for transcriptomic meta-analysis.
    Ma T; Huo Z; Kuo A; Zhu L; Fang Z; Zeng X; Lin CW; Liu S; Wang L; Liu P; Rahman T; Chang LC; Kim S; Li J; Park Y; Song C; Oesterreich S; Sibille E; Tseng GC
    Bioinformatics; 2019 May; 35(9):1597-1599. PubMed ID: 30304367
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.