These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

134 related articles for article (PubMed ID: 39051702)

  • 21. Integrating spatial transcriptomics and bulk RNA-seq: predicting gene expression with enhanced resolution through graph attention networks.
    Baul S; Tanvir Ahmed K; Jiang Q; Wang G; Li Q; Yong J; Zhang W
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38960406
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Graspot: a graph attention network for spatial transcriptomics data integration with optimal transport.
    Gao Z; Cao K; Wan L
    Bioinformatics; 2024 Sep; 40(Suppl 2):ii137-ii145. PubMed ID: 39230711
    [TBL] [Abstract][Full Text] [Related]  

  • 23. vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level.
    Zhang C; Wang H; Chung Y; Hong SH; Olmer M; Swahn H; Lotz M; Maye P; Rowe D; Shin DG
    Bioinformatics; 2024 Oct; 40(10):. PubMed ID: 39363499
    [TBL] [Abstract][Full Text] [Related]  

  • 24. spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics.
    Ospina OE; Wilson CM; Soupir AC; Berglund A; Smalley I; Tsai KY; Fridley BL
    Bioinformatics; 2022 Apr; 38(9):2645-2647. PubMed ID: 35258565
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Dr.seq2: A quality control and analysis pipeline for parallel single cell transcriptome and epigenome data.
    Zhao C; Hu S; Huo X; Zhang Y
    PLoS One; 2017; 12(7):e0180583. PubMed ID: 28671995
    [TBL] [Abstract][Full Text] [Related]  

  • 26. ScType enables fast and accurate cell type identification from spatial transcriptomics data.
    Nader K; Tasci M; Ianevski A; Erickson A; Verschuren EW; Aittokallio T; Miihkinen M
    Bioinformatics; 2024 Jul; 40(7):. PubMed ID: 38936341
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Systematic evaluation with practical guidelines for single-cell and spatially resolved transcriptomics data simulation under multiple scenarios.
    Duo H; Li Y; Lan Y; Tao J; Yang Q; Xiao Y; Sun J; Li L; Nie X; Zhang X; Liang G; Liu M; Hao Y; Li B
    Genome Biol; 2024 Jun; 25(1):145. PubMed ID: 38831386
    [TBL] [Abstract][Full Text] [Related]  

  • 28. DiffCircaPipeline: a framework for multifaceted characterization of differential rhythmicity.
    Xue X; Zong W; Huo Z; Ketchesin KD; Scott MR; Petersen KA; Logan RW; Seney ML; McClung C; Tseng G
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36655766
    [TBL] [Abstract][Full Text] [Related]  

  • 29. STtools: A Comprehensive Software Pipeline for Ultra-high Resolution Spatial Transcriptomics Data.
    Xi J; Lee JH; Kang HM; Jun G
    Bioinform Adv; 2022; 2(1):. PubMed ID: 36284674
    [TBL] [Abstract][Full Text] [Related]  

  • 30. EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning.
    Tu JJ; Li HS; Yan H; Zhang XF
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36610709
    [TBL] [Abstract][Full Text] [Related]  

  • 31. SPANN: annotating single-cell resolution spatial transcriptome data with scRNA-seq data.
    Yuan M; Wan H; Wang Z; Guo Q; Deng M
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38279647
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Computational solutions for spatial transcriptomics.
    Kleino I; Frolovaitė P; Suomi T; Elo LL
    Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
    [TBL] [Abstract][Full Text] [Related]  

  • 33. RawHummus: an R Shiny app for automated raw data quality control in metabolomics.
    Dong Y; Kazachkova Y; Gou M; Morgan L; Wachsman T; Gazit E; Birkler RID
    Bioinformatics; 2022 Mar; 38(7):2072-2074. PubMed ID: 35080628
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Regional analysis to delineate intrasample heterogeneity with RegionalST.
    Lyu Y; Wu C; Sun W; Li Z
    Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38579257
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Sopa: a technology-invariant pipeline for analyses of image-based spatial omics.
    Blampey Q; Mulder K; Gardet M; Christodoulidis S; Dutertre CA; André F; Ginhoux F; Cournède PH
    Nat Commun; 2024 Jun; 15(1):4981. PubMed ID: 38862483
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Accurately deciphering spatial domains for spatially resolved transcriptomics with stCluster.
    Wang T; Shu H; Hu J; Wang Y; Chen J; Peng J; Shang X
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38975895
    [TBL] [Abstract][Full Text] [Related]  

  • 37.
    Degnan DJ; Stratton KG; Richardson R; Claborne D; Martin EA; Johnson NA; Leach D; Webb-Robertson BM; Bramer LM
    J Proteome Res; 2023 Feb; 22(2):570-576. PubMed ID: 36622218
    [TBL] [Abstract][Full Text] [Related]  

  • 38. VariantQC: a visual quality control report for variant evaluation.
    Yan MY; Ferguson B; Bimber BN
    Bioinformatics; 2019 Dec; 35(24):5370-5371. PubMed ID: 31309221
    [TBL] [Abstract][Full Text] [Related]  

  • 39. SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression.
    Liu Y; Wang T; Duggan B; Sharpnack M; Huang K; Zhang J; Ye X; Johnson TS
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35380614
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A point cloud segmentation framework for image-based spatial transcriptomics.
    Defard T; Laporte H; Ayan M; Soulier J; Curras-Alonso S; Weber C; Massip F; Londoño-Vallejo JA; Fouillade C; Mueller F; Walter T
    Commun Biol; 2024 Jul; 7(1):823. PubMed ID: 38971915
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.