These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

154 related articles for article (PubMed ID: 39052676)

  • 1. Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile.
    Bryant P; Noé F
    PLoS Comput Biol; 2024 Jul; 20(7):e1012253. PubMed ID: 39052676
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Integrating deep learning, threading alignments, and a multi-MSA strategy for high-quality protein monomer and complex structure prediction in CASP15.
    Zheng W; Wuyun Q; Freddolino PL; Zhang Y
    Proteins; 2023 Dec; 91(12):1684-1703. PubMed ID: 37650367
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Enhancing AlphaFold-Multimer-based Protein Complex Structure Prediction with MULTICOM in CASP15.
    Liu J; Guo Z; Wu T; Roy RS; Quadir F; Chen C; Cheng J
    bioRxiv; 2023 May; ():. PubMed ID: 37293073
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes.
    Mirabello C; Wallner B; Nystedt B; Azinas S; Carroni M
    Nat Commun; 2024 Oct; 15(1):8724. PubMed ID: 39379372
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15.
    Liu J; Guo Z; Wu T; Roy RS; Quadir F; Chen C; Cheng J
    Commun Biol; 2023 Nov; 6(1):1140. PubMed ID: 37949999
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Improved protein structure prediction with trRosettaX2, AlphaFold2, and optimized MSAs in CASP15.
    Peng Z; Wang W; Wei H; Li X; Yang J
    Proteins; 2023 Dec; 91(12):1704-1711. PubMed ID: 37565699
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes.
    Zhu W; Shenoy A; Kundrotas P; Elofsson A
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37405868
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improved the heterodimer protein complex prediction with protein language models.
    Chen B; Xie Z; Qiu J; Ye Z; Xu J; Tang J
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37328552
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.
    Lensink MF; Brysbaert G; Raouraoua N; Bates PA; Giulini M; Honorato RV; van Noort C; Teixeira JMC; Bonvin AMJJ; Kong R; Shi H; Lu X; Chang S; Liu J; Guo Z; Chen X; Morehead A; Roy RS; Wu T; Giri N; Quadir F; Chen C; Cheng J; Del Carpio CA; Ichiishi E; Rodriguez-Lumbreras LA; Fernandez-Recio J; Harmalkar A; Chu LS; Canner S; Smanta R; Gray JJ; Li H; Lin P; He J; Tao H; Huang SY; Roel-Touris J; Jimenez-Garcia B; Christoffer CW; Jain AJ; Kagaya Y; Kannan H; Nakamura T; Terashi G; Verburgt JC; Zhang Y; Zhang Z; Fujuta H; Sekijima M; Kihara D; Khan O; Kotelnikov S; Ghani U; Padhorny D; Beglov D; Vajda S; Kozakov D; Negi SS; Ricciardelli T; Barradas-Bautista D; Cao Z; Chawla M; Cavallo L; Oliva R; Yin R; Cheung M; Guest JD; Lee J; Pierce BG; Shor B; Cohen T; Halfon M; Schneidman-Duhovny D; Zhu S; Yin R; Sun Y; Shen Y; Maszota-Zieleniak M; Bojarski KK; Lubecka EA; Marcisz M; Danielsson A; Dziadek L; Gaardlos M; Gieldon A; Liwo A; Samsonov SA; Slusarz R; Zieba K; Sieradzan AK; Czaplewski C; Kobayashi S; Miyakawa Y; Kiyota Y; Takeda-Shitaka M; Olechnovic K; Valancauskas L; Dapkunas J; Venclovas C; Wallner B; Yang L; Hou C; He X; Guo S; Jiang S; Ma X; Duan R; Qui L; Xu X; Zou X; Velankar S; Wodak SJ
    Proteins; 2023 Dec; 91(12):1658-1683. PubMed ID: 37905971
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Applying and improving AlphaFold at CASP14.
    Jumper J; Evans R; Pritzel A; Green T; Figurnov M; Ronneberger O; Tunyasuvunakool K; Bates R; Žídek A; Potapenko A; Bridgland A; Meyer C; Kohl SAA; Ballard AJ; Cowie A; Romera-Paredes B; Nikolov S; Jain R; Adler J; Back T; Petersen S; Reiman D; Clancy E; Zielinski M; Steinegger M; Pacholska M; Berghammer T; Silver D; Vinyals O; Senior AW; Kavukcuoglu K; Kohli P; Hassabis D
    Proteins; 2021 Dec; 89(12):1711-1721. PubMed ID: 34599769
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2.
    Chim HY; Elofsson A
    Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38781500
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.
    Ozden B; Kryshtafovych A; Karaca E
    Proteins; 2023 Dec; 91(12):1636-1657. PubMed ID: 37861057
    [TBL] [Abstract][Full Text] [Related]  

  • 13. AFsample: improving multimer prediction with AlphaFold using massive sampling.
    Wallner B
    Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37713472
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improved multimer prediction using massive sampling with AlphaFold in CASP15.
    Wallner B
    Proteins; 2023 Dec; 91(12):1734-1746. PubMed ID: 37548092
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Improving protein structure prediction with extended sequence similarity searches and deep-learning-based refinement in CASP15.
    Oda T
    Proteins; 2023 Dec; 91(12):1712-1723. PubMed ID: 37485822
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13).
    Senior AW; Evans R; Jumper J; Kirkpatrick J; Sifre L; Green T; Qin C; Žídek A; Nelson AWR; Bridgland A; Penedones H; Petersen S; Simonyan K; Crossan S; Kohli P; Jones DT; Silver D; Kavukcuoglu K; Hassabis D
    Proteins; 2019 Dec; 87(12):1141-1148. PubMed ID: 31602685
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Petabase-Scale Homology Search for Structure Prediction.
    Lee S; Kim G; Karin EL; Mirdita M; Park S; Chikhi R; Babaian A; Kryshtafovych A; Steinegger M
    Cold Spring Harb Perspect Biol; 2024 May; 16(5):. PubMed ID: 38316555
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The whole is greater than its parts: ensembling improves protein contact prediction.
    Billings WM; Morris CJ; Della Corte D
    Sci Rep; 2021 Apr; 11(1):8039. PubMed ID: 33850214
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Prediction of protein assemblies by structure sampling followed by interface-focused scoring.
    Olechnovič K; Valančauskas L; Dapkūnas J; Venclovas Č
    Proteins; 2023 Dec; 91(12):1724-1733. PubMed ID: 37578163
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data.
    Zheng W; Wuyun Q; Li Y; Zhang C; Freddolino PL; Zhang Y
    Nat Methods; 2024 Feb; 21(2):279-289. PubMed ID: 38167654
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.