These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
173 related articles for article (PubMed ID: 39056705)
1. Diffusion on PCA-UMAP Manifold: The Impact of Data Structure Preservation to Denoise High-Dimensional Single-Cell RNA Sequencing Data. Cristian PM; Aarón VJ; Armando ED; Estrella MY; Daniel NR; David GV; Edgar M; Paul SJ; Osbaldo RA Biology (Basel); 2024 Jul; 13(7):. PubMed ID: 39056705 [TBL] [Abstract][Full Text] [Related]
2. K-nearest-neighbors induced topological PCA for single cell RNA-sequence data analysis. Cottrell S; Hozumi Y; Wei GW Comput Biol Med; 2024 Jun; 175():108497. PubMed ID: 38678944 [TBL] [Abstract][Full Text] [Related]
3. K-Nearest-Neighbors Induced Topological PCA for Single Cell RNA-Sequence Data Analysis. Cottrell S; Hozumi Y; Wei GW ArXiv; 2023 Oct; ():. PubMed ID: 37961744 [TBL] [Abstract][Full Text] [Related]
4. Computational solutions for spatial transcriptomics. Kleino I; Frolovaitė P; Suomi T; Elo LL Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664 [TBL] [Abstract][Full Text] [Related]
5. mb-PHENIX: diffusion and supervised uniform manifold approximation for denoizing microbiota data. Padron-Manrique C; Vázquez-Jiménez A; Esquivel-Hernandez DA; Martinez Lopez YE; Neri-Rosario D; Sánchez-Castañeda JP; Giron-Villalobos D; Resendis-Antonio O Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38015858 [TBL] [Abstract][Full Text] [Related]
6. scZAG: Integrating ZINB-Based Autoencoder with Adaptive Data Augmentation Graph Contrastive Learning for scRNA-seq Clustering. Zhang T; Ren J; Li L; Wu Z; Zhang Z; Dong G; Wang G Int J Mol Sci; 2024 May; 25(11):. PubMed ID: 38892162 [TBL] [Abstract][Full Text] [Related]
7. SUSCC: Secondary Construction of Feature Space based on UMAP for Rapid and Accurate Clustering Large-scale Single Cell RNA-seq Data. Wang HY; Zhao JP; Zheng CH Interdiscip Sci; 2021 Mar; 13(1):83-90. PubMed ID: 33475958 [TBL] [Abstract][Full Text] [Related]
11. Attention-based deep clustering method for scRNA-seq cell type identification. Li S; Guo H; Zhang S; Li Y; Li M PLoS Comput Biol; 2023 Nov; 19(11):e1011641. PubMed ID: 37948464 [TBL] [Abstract][Full Text] [Related]
12. Joint L Wang TG; Shang JL; Liu JX; Li F; Yuan S; Wang J Comput Methods Biomech Biomed Engin; 2024; 27(4):498-511. PubMed ID: 36912759 [TBL] [Abstract][Full Text] [Related]
13. deepMNN: Deep Learning-Based Single-Cell RNA Sequencing Data Batch Correction Using Mutual Nearest Neighbors. Zou B; Zhang T; Zhou R; Jiang X; Yang H; Jin X; Bai Y Front Genet; 2021; 12():708981. PubMed ID: 34447413 [TBL] [Abstract][Full Text] [Related]
14. Dual-GCN-based deep clustering with triplet contrast for ScRNA-seq data analysis. Wang L; Li W; Xie W; Wang R; Yu K Comput Biol Chem; 2023 Oct; 106():107924. PubMed ID: 37487251 [TBL] [Abstract][Full Text] [Related]
15. ARGLRR: A Sparse Low-Rank Representation Single-Cell RNA-Sequencing Data Clustering Method Combined with a New Graph Regularization. Wang ZC; Liu JX; Shang JL; Dai LY; Zheng CH; Wang J J Comput Biol; 2023 Aug; 30(8):848-860. PubMed ID: 37471220 [TBL] [Abstract][Full Text] [Related]
16. Single-Cell Clustering Based on Shared Nearest Neighbor and Graph Partitioning. Zhu X; Zhang J; Xu Y; Wang J; Peng X; Li HD Interdiscip Sci; 2020 Jun; 12(2):117-130. PubMed ID: 32086753 [TBL] [Abstract][Full Text] [Related]
17. SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression. Liu Y; Wang T; Duggan B; Sharpnack M; Huang K; Zhang J; Ye X; Johnson TS Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35380614 [TBL] [Abstract][Full Text] [Related]
18. Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data. Tjärnberg A; Mahmood O; Jackson CA; Saldi GA; Cho K; Christiaen LA; Bonneau RA PLoS Comput Biol; 2021 Jan; 17(1):e1008569. PubMed ID: 33411784 [TBL] [Abstract][Full Text] [Related]
20. stDiff: a diffusion model for imputing spatial transcriptomics through single-cell transcriptomics. Li K; Li J; Tao Y; Wang F Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38628114 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]