These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

251 related articles for article (PubMed ID: 39103467)

  • 1. Bayesian reweighting of biomolecular structural ensembles using heterogeneous cryo-EM maps with the cryoENsemble method.
    Włodarski T; Streit JO; Mitropoulou A; Cabrita LD; Vendruscolo M; Christodoulou J
    Sci Rep; 2024 Aug; 14(1):18149. PubMed ID: 39103467
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Ensemble Reweighting Using Cryo-EM Particle Images.
    Tang WS; Silva-Sánchez D; Giraldo-Barreto J; Carpenter B; Hanson SM; Barnett AH; Thiede EH; Cossio P
    J Phys Chem B; 2023 Jun; 127(24):5410-5421. PubMed ID: 37293763
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference.
    Hoff SE; Thomasen FE; Lindorff-Larsen K; Bonomi M
    PLoS Comput Biol; 2024 Jul; 20(7):e1012180. PubMed ID: 39008528
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling.
    Bonomi M; Hanot S; Greenberg CH; Sali A; Nilges M; Vendruscolo M; Pellarin R
    Structure; 2019 Jan; 27(1):175-188.e6. PubMed ID: 30393052
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Guide for determination of protein structural ensembles by combining cryo-EM data with metadynamics.
    Brotzakis ZF
    FEBS Open Bio; 2023 Jul; 13(7):1193-1203. PubMed ID: 36562694
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
    Bhakta S; Akbar S; Sengupta J
    J Mol Biol; 2019 Mar; 431(7):1426-1439. PubMed ID: 30753870
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Single-particle Cryo-EM and molecular dynamics simulations: A perfect match.
    Bock LV; Igaev M; Grubmüller H
    Curr Opin Struct Biol; 2024 Jun; 86():102825. PubMed ID: 38723560
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ribosome dynamics: insights from atomic structure modeling into cryo-electron microscopy maps.
    Mitra K; Frank J
    Annu Rev Biophys Biomol Struct; 2006; 35():299-317. PubMed ID: 16689638
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Applications of the molecular dynamics flexible fitting method.
    Trabuco LG; Schreiner E; Gumbart J; Hsin J; Villa E; Schulten K
    J Struct Biol; 2011 Mar; 173(3):420-7. PubMed ID: 20932910
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Cryo-electron Microscopy and Molecular Modeling Methods to Characterize the Dynamics of Tau Bound to Microtubules.
    Brotzakis ZF
    Methods Mol Biol; 2024; 2754():77-90. PubMed ID: 38512661
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Dynamic Behavior of Trigger Factor on the Ribosome.
    Deeng J; Chan KY; van der Sluis EO; Berninghausen O; Han W; Gumbart J; Schulten K; Beatrix B; Beckmann R
    J Mol Biol; 2016 Sep; 428(18):3588-602. PubMed ID: 27320387
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structural Heterogeneities of the Ribosome: New Frontiers and Opportunities for Cryo-EM.
    Poitevin F; Kushner A; Li X; Dao Duc K
    Molecules; 2020 Sep; 25(18):. PubMed ID: 32957592
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CryoFold 2.0: Cryo-EM Structure Determination with MELD.
    Chang L; Mondal A; MacCallum JL; Perez A
    J Phys Chem A; 2023 May; 127(17):3906-3913. PubMed ID: 37084537
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Exploring cryo-electron microscopy with molecular dynamics.
    Vant JW; Sarkar D; Nguyen J; Baker AT; Vermaas JV; Singharoy A
    Biochem Soc Trans; 2022 Feb; 50(1):569-581. PubMed ID: 35212361
    [TBL] [Abstract][Full Text] [Related]  

  • 15. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
    Punjani A; Rubinstein JL; Fleet DJ; Brubaker MA
    Nat Methods; 2017 Mar; 14(3):290-296. PubMed ID: 28165473
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography.
    Trabuco LG; Villa E; Schreiner E; Harrison CB; Schulten K
    Methods; 2009 Oct; 49(2):174-80. PubMed ID: 19398010
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structure of the E. coli ribosome-EF-Tu complex at <3 Å resolution by Cs-corrected cryo-EM.
    Fischer N; Neumann P; Konevega AL; Bock LV; Ficner R; Rodnina MV; Stark H
    Nature; 2015 Apr; 520(7548):567-70. PubMed ID: 25707802
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cryo-electron microscopy modeling by the molecular dynamics flexible fitting method.
    Chan KY; Trabuco LG; Schreiner E; Schulten K
    Biopolymers; 2012 Sep; 97(9):678-86. PubMed ID: 22696404
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Structure of the bacterial ribosome at 2 Å resolution.
    Watson ZL; Ward FR; Méheust R; Ad O; Schepartz A; Banfield JF; Cate JH
    Elife; 2020 Sep; 9():. PubMed ID: 32924932
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Advancing cryo-electron microscopy data analysis through accelerated simulation-based flexible fitting approaches.
    Miyashita O; Tama F
    Curr Opin Struct Biol; 2023 Oct; 82():102653. PubMed ID: 37451233
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.