These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

59 related articles for article (PubMed ID: 39210505)

  • 1. Peptide-specific chemical language model successfully predicts membrane diffusion of cyclic peptides.
    Feller AL; Wilke CO
    bioRxiv; 2024 Aug; ():. PubMed ID: 39149303
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CycPeptMP: enhancing membrane permeability prediction of cyclic peptides with multi-level molecular features and data augmentation.
    Li J; Yanagisawa K; Akiyama Y
    Brief Bioinform; 2024 Jul; 25(5):. PubMed ID: 39210505
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Enhancing property and activity prediction and interpretation using multiple molecular graph representations with MMGX.
    Kengkanna A; Ohue M
    Commun Chem; 2024 Apr; 7(1):74. PubMed ID: 38580841
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Relative molecule self-attention transformer.
    Maziarka Ł; Majchrowski D; Danel T; Gaiński P; Tabor J; Podolak I; Morkisz P; Jastrzębski S
    J Cheminform; 2024 Jan; 16(1):3. PubMed ID: 38173009
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A prediction model for blood-brain barrier penetrating peptides based on masked peptide transformers with dynamic routing.
    Ma C; Wolfinger R
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37985456
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An amide to thioamide substitution improves the permeability and bioavailability of macrocyclic peptides.
    Ghosh P; Raj N; Verma H; Patel M; Chakraborti S; Khatri B; Doreswamy CM; Anandakumar SR; Seekallu S; Dinesh MB; Jadhav G; Yadav PN; Chatterjee J
    Nat Commun; 2023 Sep; 14(1):6050. PubMed ID: 37770425
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Design of Cyclic Peptides Targeting Protein-Protein Interactions Using AlphaFold.
    Kosugi T; Ohue M
    Int J Mol Sci; 2023 Aug; 24(17):. PubMed ID: 37686057
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TransFoxMol: predicting molecular property with focused attention.
    Gao J; Shen Z; Xie Y; Lu J; Lu Y; Chen S; Bian Q; Guo Y; Shen L; Wu J; Zhou B; Hou T; He Q; Che J; Dong X
    Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37605947
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fingerprint-Enhanced Graph Attention Network (FinGAT) Model for Antibiotic Discovery.
    Choo HY; Wee J; Shen C; Xia K
    J Chem Inf Model; 2023 May; 63(10):2928-2935. PubMed ID: 37167016
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Methods for generating and screening libraries of genetically encoded cyclic peptides in drug discovery.
    Sohrabi C; Foster A; Tavassoli A
    Nat Rev Chem; 2020 Feb; 4(2):90-101. PubMed ID: 37128052
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Pharmacophoric-constrained heterogeneous graph transformer model for molecular property prediction.
    Jiang Y; Jin S; Jin X; Xiao X; Wu W; Liu X; Zhang Q; Zeng X; Yang G; Niu Z
    Commun Chem; 2023 Apr; 6(1):60. PubMed ID: 37012352
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Amide-to-ester substitution as a stable alternative to N-methylation for increasing membrane permeability in cyclic peptides.
    Hosono Y; Uchida S; Shinkai M; Townsend CE; Kelly CN; Naylor MR; Lee HW; Kanamitsu K; Ishii M; Ueki R; Ueda T; Takeuchi K; Sugita M; Akiyama Y; Lokey SR; Morimoto J; Sando S
    Nat Commun; 2023 Mar; 14(1):1416. PubMed ID: 36932083
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CycPeptMPDB: A Comprehensive Database of Membrane Permeability of Cyclic Peptides.
    Li J; Yanagisawa K; Sugita M; Fujie T; Ohue M; Akiyama Y
    J Chem Inf Model; 2023 Apr; 63(7):2240-2250. PubMed ID: 36930969
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Peptide Utility (PU) search server: A new tool for peptide sequence search from multiple databases.
    Chamoli T; Khera A; Sharma A; Gupta A; Garg S; Mamgain K; Bansal A; Verma S; Gupta A; Alajangi HK; Singh G; Barnwal RP
    Heliyon; 2022 Dec; 8(12):e12283. PubMed ID: 36590540
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning.
    Zhang X; Wei L; Ye X; Zhang K; Teng S; Li Z; Jin J; Kim MJ; Sakurai T; Cui L; Manavalan B; Wei L
    Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36562719
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Lipid Composition Is Critical for Accurate Membrane Permeability Prediction of Cyclic Peptides by Molecular Dynamics Simulations.
    Sugita M; Fujie T; Yanagisawa K; Ohue M; Akiyama Y
    J Chem Inf Model; 2022 Sep; 62(18):4549-4560. PubMed ID: 36053061
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accurate de novo design of membrane-traversing macrocycles.
    Bhardwaj G; O'Connor J; Rettie S; Huang YH; Ramelot TA; Mulligan VK; Alpkilic GG; Palmer J; Bera AK; Bick MJ; Di Piazza M; Li X; Hosseinzadeh P; Craven TW; Tejero R; Lauko A; Choi R; Glynn C; Dong L; Griffin R; van Voorhis WC; Rodriguez J; Stewart L; Montelione GT; Craik D; Baker D
    Cell; 2022 Sep; 185(19):3520-3532.e26. PubMed ID: 36041435
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Pseudo-Isolated α-Helix Platform for the Recognition of Deep and Narrow Targets.
    Kim DI; Han SH; Park H; Choi S; Kaur M; Hwang E; Han SJ; Ryu JY; Cheong HK; Barnwal RP; Lim YB
    J Am Chem Soc; 2022 Aug; 144(34):15519-15528. PubMed ID: 35972994
    [TBL] [Abstract][Full Text] [Related]  

  • 19.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 3.