These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

95 related articles for article (PubMed ID: 39211254)

  • 1. ConsensuSV-ONT - a modern method for accurate structural variant calling.
    Pietryga A; Chilinski M; Gadakh S; Plewczynski D
    bioRxiv; 2024 Jul; ():. PubMed ID: 39211254
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HapKled: a haplotype-aware structural variant calling approach for Oxford nanopore sequencing data.
    Zhang Z; Liu Y; Li X; Liu Y; Wang Y; Jiang T
    Front Genet; 2024; 15():1435087. PubMed ID: 39045321
    [No Abstract]   [Full Text] [Related]  

  • 3. Evaluation of the Available Variant Calling Tools for Oxford Nanopore Sequencing in Breast Cancer.
    Helal AA; Saad BT; Saad MT; Mosaad GS; Aboshanab KM
    Genes (Basel); 2022 Sep; 13(9):. PubMed ID: 36140751
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.
    Leung AW; Leung HC; Wong CL; Zheng ZX; Lui WW; Luk HM; Lo IF; Luo R; Lam TW
    BMC Med Genomics; 2022 Mar; 15(1):43. PubMed ID: 35246132
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Comparison of Structural Variant Calling from Short-Read and Nanopore-Based Whole-Genome Sequencing Using Optical Genome Mapping as a Benchmark.
    Pei Y; Tanguy M; Giess A; Dixit A; Wilson LC; Gibbons RJ; Twigg SRF; Elgar G; Wilkie AOM
    Genes (Basel); 2024 Jul; 15(7):. PubMed ID: 39062704
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ConsensuSV-from the whole-genome sequencing data to the complete variant list.
    Chiliński M; Plewczynski D
    Bioinformatics; 2022 Dec; 38(24):5440-5442. PubMed ID: 36315072
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Complete pipeline for Oxford Nanopore Technology amplicon sequencing (ONT-AmpSeq): from pre-processing to creating an operational taxonomic unit table.
    Schacksen PS; Østergaard SK; Eskildsen MH; Nielsen JL
    FEBS Open Bio; 2024 Aug; ():. PubMed ID: 39109544
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Local read haplotagging enables accurate long-read small variant calling.
    Kolesnikov A; Cook D; Nattestad M; McNulty B; Gorzynski J; Goenka S; Ashley EA; Jain M; Miga KH; Paten B; Chang PC; Carroll A; Shafin K
    bioRxiv; 2023 Sep; ():. PubMed ID: 37745389
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Halvade somatic: Somatic variant calling with Apache Spark.
    Decap D; de Schaetzen van Brienen L; Larmuseau M; Costanza P; Herzeel C; Wuyts R; Marchal K; Fostier J
    Gigascience; 2022 Jan; 11(1):. PubMed ID: 35022699
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.
    Murigneux V; Roberts LW; Forde BM; Phan MD; Nhu NTK; Irwin AD; Harris PNA; Paterson DL; Schembri MA; Whiley DM; Beatson SA
    BMC Genomics; 2021 Jun; 22(1):474. PubMed ID: 34172000
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Local read haplotagging enables accurate long-read small variant calling.
    Kolesnikov A; Cook D; Nattestad M; Brambrink L; McNulty B; Gorzynski J; Goenka S; Ashley EA; Jain M; Miga KH; Paten B; Chang PC; Carroll A; Shafin K
    Nat Commun; 2024 Jul; 15(1):5907. PubMed ID: 39003259
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A deep learning approach for filtering structural variants in short read sequencing data.
    Liu Y; Huang Y; Wang G; Wang Y
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33378767
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation of Germline Structural Variant Calling Methods for Nanopore Sequencing Data.
    Bolognini D; Magi A
    Front Genet; 2021; 12():761791. PubMed ID: 34868242
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Preclinical workup using long-read amplicon sequencing provides families with de novo pathogenic variants access to universal preimplantation genetic testing.
    Tsuiko O; El Ayeb Y; Jatsenko T; Allemeersch J; Melotte C; Ding J; Debrock S; Peeraer K; Vanhie A; De Leener A; Pirard C; Kluyskens C; Denayer E; Legius E; Vermeesch JR; Brems H; Dimitriadou E
    Hum Reprod; 2023 Mar; 38(3):511-519. PubMed ID: 36625546
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Optimization of Oxford Nanopore Technology Sequencing Workflow for Detection of Amplicons in Real Time Using ONT-DART Tool.
    Player R; Verratti K; Staab A; Forsyth E; Ernlund A; Joshi MS; Dunning R; Rozak D; Grady S; Goodwin B; Sozhamannan S
    Genes (Basel); 2022 Oct; 13(10):. PubMed ID: 36292670
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
    Bogaerts B; Van den Bossche A; Verhaegen B; Delbrassinne L; Mattheus W; Nouws S; Godfroid M; Hoffman S; Roosens NHC; De Keersmaecker SCJ; Vanneste K
    J Clin Microbiol; 2024 May; 62(5):e0157623. PubMed ID: 38441926
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Robust long-read native DNA sequencing using the ONT CsgG Nanopore system.
    Carter JM; Hussain S
    Wellcome Open Res; 2017 Apr; 2():23. PubMed ID: 28503666
    [No Abstract]   [Full Text] [Related]  

  • 18. A Long-Read Sequencing Approach for Direct Haplotype Phasing in Clinical Settings.
    Maestri S; Maturo MG; Cosentino E; Marcolungo L; Iadarola B; Fortunati E; Rossato M; Delledonne M
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271988
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Calling and Phasing of Single-Nucleotide and Structural Variants of the
    Nazarenko MS; Sleptcov AA; Zarubin AA; Salakhov RR; Shevchenko AI; Tmoyan NA; Elisaphenko EA; Zubkova ES; Zheltysheva NV; Ezhov MV; Kukharchuk VV; Parfyonova YV; Zakian SM; Zakharova IS
    Int J Mol Sci; 2023 Feb; 24(5):. PubMed ID: 36901902
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The Utility of Long-Read Sequencing in Diagnosing Genetic Autosomal Recessive Parkinson's Disease: a genetic screening study.
    Daida K; Yoshino H; Malik L; Baker B; Ishiguro M; Genner R; Paquette K; Li Y; Nishioka K; Masuzugawa S; Hirano M; Takahashi K; Kolmogolv M; Billingsley KJ; Funayama M; Blauwendraat C; Hattori N
    medRxiv; 2024 Jun; ():. PubMed ID: 39108517
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.