These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 39226177)

  • 1. SWAMPy: simulating SARS-CoV-2 wastewater amplicon metagenomes.
    Boulton W; Fidan FR; Denise H; De Maio N; Goldman N
    Bioinformatics; 2024 Sep; 40(9):. PubMed ID: 39226177
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Highly sensitive wastewater surveillance of SARS-CoV-2 variants by targeted next-generation amplicon sequencing provides early warning of incursion in Victoria, Australia.
    Merrett JE; Nolan M; Hartman L; John N; Flynn B; Baker L; Schang C; McCarthy D; Lister D; Cheng NN; Crosbie N; Poon R; Jex A
    Appl Environ Microbiol; 2024 Aug; 90(8):e0149723. PubMed ID: 39012098
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Combining Short- and Long-Read Sequencing Technologies to Identify SARS-CoV-2 Variants in Wastewater.
    Jayme G; Liu JL; Galvez JH; Reiling SJ; Celikkol S; N'Guessan A; Lee S; Chen SH; Tsitouras A; Sanchez-Quete F; Maere T; Goitom E; Hachad M; Mercier E; Loeb SK; Vanrolleghem PA; Dorner S; Delatolla R; Shapiro BJ; Frigon D; Ragoussis J; Snutch TP
    Viruses; 2024 Sep; 16(9):. PubMed ID: 39339971
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants.
    Crits-Christoph A; Kantor RS; Olm MR; Whitney ON; Al-Shayeb B; Lou YC; Flamholz A; Kennedy LC; Greenwald H; Hinkle A; Hetzel J; Spitzer S; Koble J; Tan A; Hyde F; Schroth G; Kuersten S; Banfield JF; Nelson KL
    mBio; 2021 Jan; 12(1):. PubMed ID: 33468686
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens.
    Wang MX; Lou EG; Sapoval N; Kim E; Kalvapalle P; Kille B; Elworth RAL; Liu Y; Fu Y; Stadler LB; Treangen TJ
    Nat Commun; 2024 Jul; 15(1):6306. PubMed ID: 39060254
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2.
    Gohl DM; Garbe J; Grady P; Daniel J; Watson RHB; Auch B; Nelson A; Yohe S; Beckman KB
    BMC Genomics; 2020 Dec; 21(1):863. PubMed ID: 33276717
    [TBL] [Abstract][Full Text] [Related]  

  • 7. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.
    Santos JD; Sobral D; Pinheiro M; Isidro J; Bogaardt C; Pinto M; Eusébio R; Santos A; Mamede R; Horton DL; Gomes JP; ; Borges V
    Genome Med; 2024 Apr; 16(1):61. PubMed ID: 38659008
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNA Viromics of Southern California Wastewater and Detection of SARS-CoV-2 Single-Nucleotide Variants.
    Rothman JA; Loveless TB; Kapcia J; Adams ED; Steele JA; Zimmer-Faust AG; Langlois K; Wanless D; Griffith M; Mao L; Chokry J; Griffith JF; Whiteson KL
    Appl Environ Microbiol; 2021 Nov; 87(23):e0144821. PubMed ID: 34550753
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Revealing patterns of SARS-CoV-2 variant emergence and evolution using RBD amplicon sequencing of wastewater.
    Chen X; Balliew J; Bauer CX; Deegan J; Gitter A; Hanson BM; Maresso AW; Tisza MJ; Troisi CL; Rios J; Mena KD; Boerwinkle E; Wu F
    J Infect; 2024 Nov; 89(5):106284. PubMed ID: 39341403
    [TBL] [Abstract][Full Text] [Related]  

  • 10. An optimized, amplicon-based approach for sequencing of SARS-CoV-2 from patient samples using COVIDSeq assay on Illumina MiSeq sequencing platforms.
    Bhoyar RC; Senthivel V; Jolly B; Imran M; Jain A; Divakar MK; Scaria V; Sivasubbu S
    STAR Protoc; 2021 Sep; 2(3):100755. PubMed ID: 34368787
    [TBL] [Abstract][Full Text] [Related]  

  • 11. High-resolution and real-time wastewater viral surveillance by Nanopore sequencing.
    Xu X; Deng Y; Ding J; Tang Q; Lin Y; Zheng X; Zhang T
    Water Res; 2024 Jun; 256():121623. PubMed ID: 38657304
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Metagenomic Sequencing To Detect Respiratory Viruses in Persons under Investigation for COVID-19.
    Babiker A; Bradley HL; Stittleburg VD; Ingersoll JM; Key A; Kraft CS; Waggoner JJ; Piantadosi A
    J Clin Microbiol; 2020 Dec; 59(1):. PubMed ID: 33067271
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples.
    Kubik S; Marques AC; Xing X; Silvery J; Bertelli C; De Maio F; Pournaras S; Burr T; Duffourd Y; Siemens H; Alloui C; Song L; Wenger Y; Saitta A; Macheret M; Smith EW; Menu P; Brayer M; Steinmetz LM; Si-Mohammed A; Chuisseu J; Stevens R; Constantoulakis P; Sali M; Greub G; Tiemann C; Pelechano V; Willig A; Xu Z
    Clin Microbiol Infect; 2021 Jul; 27(7):1036.e1-1036.e8. PubMed ID: 33813118
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparison of metagenomic and targeted methods for sequencing human pathogenic viruses from wastewater.
    Child HT; Airey G; Maloney DM; Parker A; Wild J; McGinley S; Evens N; Porter J; Templeton K; Paterson S; van Aerle R; Wade MJ; Jeffries AR; Bassano I
    mBio; 2023 Dec; 14(6):e0146823. PubMed ID: 37877702
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data.
    Sutcliffe SG; Kraemer SA; Ellmen I; Knapp JJ; Overton AK; Nash D; Nissimov JI; Charles TC; Dreifuss D; Topolsky I; Baykal PI; Fuhrmann L; Jablonski KP; Beerenwinkel N; Levy JI; Olabode AS; Becker DG; Gugan G; Brintnell E; Poon AFY; Valieris R; Drummond RD; Defelicibus A; Dias-Neto E; Rosales RA; Tojal da Silva I; Orfanou A; Psomopoulos F; Pechlivanis N; Pipes L; Chen Z; Baaijens JA; Baym M; Shapiro BJ
    Microb Genom; 2024 May; 10(5):. PubMed ID: 38785221
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Simultaneous detection and characterization of common respiratory pathogens in wastewater through genomic sequencing.
    Williams RC; Farkas K; Garcia-Delgado A; Adwan L; Kevill JL; Cross G; Weightman AJ; Jones DL
    Water Res; 2024 Jun; 256():121612. PubMed ID: 38642537
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA's GenomeTrakr network.
    Timme RE; Woods J; Jones JL; Calci KR; Rodriguez R; Barnes C; Leard E; Craven M; Chen H; Boerner C; Grim C; Windsor AM; Ramachandran P; Muruvanda T; Rand H; Tesfaldet B; Amirzadegan J; Kayikcioglu T; Walsky T; Allard M; Balkey M; Bias CH; Brown E; Judy K; Pfefer T; Tallent SM; Hoffmann M; ; Pettengill J
    mSystems; 2024 Jun; 9(6):e0141523. PubMed ID: 38819130
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reconstructing SARS-CoV-2 lineages from mixed wastewater sequencing data.
    Ellmen I; Overton AK; Knapp JJ; Nash D; Ho H; Hungwe Y; Prasla S; Nissimov JI; Charles TC
    Sci Rep; 2024 Aug; 14(1):20273. PubMed ID: 39217200
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients.
    Mostafa HH; Fissel JA; Fanelli B; Bergman Y; Gniazdowski V; Dadlani M; Carroll KC; Colwell RR; Simner PJ
    mBio; 2020 Nov; 11(6):. PubMed ID: 33219095
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Monitoring SARS-CoV-2 Populations in Wastewater by Amplicon Sequencing and Using the Novel Program SAM Refiner.
    Gregory DA; Wieberg CG; Wenzel J; Lin CH; Johnson MC
    Viruses; 2021 Aug; 13(8):. PubMed ID: 34452511
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.