These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 39240375)

  • 21. tarSVM: Improving the accuracy of variant calls derived from microfluidic PCR-based targeted next generation sequencing using a support vector machine.
    Gillies CE; Otto EA; Vega-Warner V; Robertson CC; Sanna-Cherchi S; Gharavi A; Crawford B; Bhimma R; Winkler C; ; ; Kang HM; Sampson MG
    BMC Bioinformatics; 2016 Jun; 17(1):233. PubMed ID: 27287006
    [TBL] [Abstract][Full Text] [Related]  

  • 22. nanotatoR: a tool for enhanced annotation of genomic structural variants.
    Bhattacharya S; Barseghyan H; Délot EC; Vilain E
    BMC Genomics; 2021 Jan; 22(1):10. PubMed ID: 33407088
    [TBL] [Abstract][Full Text] [Related]  

  • 23. SVsearcher: A more accurate structural variation detection method in long read data.
    Zheng Y; Shang X; Sung WK
    Comput Biol Med; 2023 May; 158():106843. PubMed ID: 37019014
    [TBL] [Abstract][Full Text] [Related]  

  • 24. svclassify: a method to establish benchmark structural variant calls.
    Parikh H; Mohiyuddin M; Lam HY; Iyer H; Chen D; Pratt M; Bartha G; Spies N; Losert W; Zook JM; Salit M
    BMC Genomics; 2016 Jan; 17():64. PubMed ID: 26772178
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Detecting genomic deletions from high-throughput sequence data with unsupervised learning.
    Li X; Wu Y
    BMC Bioinformatics; 2023 Jan; 23(Suppl 8):568. PubMed ID: 36707775
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Long-read-based human genomic structural variation detection with cuteSV.
    Jiang T; Liu Y; Jiang Y; Li J; Gao Y; Cui Z; Liu Y; Liu B; Wang Y
    Genome Biol; 2020 Aug; 21(1):189. PubMed ID: 32746918
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.
    Mohiyuddin M; Mu JC; Li J; Bani Asadi N; Gerstein MB; Abyzov A; Wong WH; Lam HY
    Bioinformatics; 2015 Aug; 31(16):2741-4. PubMed ID: 25861968
    [TBL] [Abstract][Full Text] [Related]  

  • 28. PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation.
    Mahmoud M; Doddapaneni H; Timp W; Sedlazeck FJ
    Genome Biol; 2021 Sep; 22(1):268. PubMed ID: 34521442
    [TBL] [Abstract][Full Text] [Related]  

  • 29. SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.
    Gu W; Zhou A; Wang L; Sun S; Cui X; Zhu D
    J Comput Biol; 2021 Aug; 28(8):774-788. PubMed ID: 33973820
    [TBL] [Abstract][Full Text] [Related]  

  • 30. SVPV: a structural variant prediction viewer for paired-end sequencing datasets.
    Munro JE; Dunwoodie SL; Giannoulatou E
    Bioinformatics; 2017 Jul; 33(13):2032-2033. PubMed ID: 28334120
    [TBL] [Abstract][Full Text] [Related]  

  • 31. StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.
    Sharo AG; Hu Z; Sunyaev SR; Brenner SE
    Am J Hum Genet; 2022 Feb; 109(2):195-209. PubMed ID: 35032432
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone.
    Trappe K; Emde AK; Ehrlich HC; Reinert K
    Bioinformatics; 2014 Dec; 30(24):3484-90. PubMed ID: 25028727
    [TBL] [Abstract][Full Text] [Related]  

  • 33. GGTyper: genotyping complex structural variants using short-read sequencing data.
    Mirus T; Lohmayer R; Döhring C; Halldórsson BV; Kehr B
    Bioinformatics; 2024 Sep; 40(Suppl 2):ii11-ii19. PubMed ID: 39230689
    [TBL] [Abstract][Full Text] [Related]  

  • 34. FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods.
    Becker T; Lee WP; Leone J; Zhu Q; Zhang C; Liu S; Sargent J; Shanker K; Mil-Homens A; Cerveira E; Ryan M; Cha J; Navarro FCP; Galeev T; Gerstein M; Mills RE; Shin DG; Lee C; Malhotra A
    Genome Biol; 2018 Mar; 19(1):38. PubMed ID: 29559002
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv.
    Shiraishi Y; Koya J; Chiba K; Okada A; Arai Y; Saito Y; Shibata T; Kataoka K
    Nucleic Acids Res; 2023 Aug; 51(14):e74. PubMed ID: 37336583
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Leaf: an ultrafast filter for population-scale long-read SV detection.
    Pan C; Reinert K
    Genome Biol; 2024 Jun; 25(1):155. PubMed ID: 38872200
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Detection of mosaic and population-level structural variants with Sniffles2.
    Smolka M; Paulin LF; Grochowski CM; Horner DW; Mahmoud M; Behera S; Kalef-Ezra E; Gandhi M; Hong K; Pehlivan D; Scholz SW; Carvalho CMB; Proukakis C; Sedlazeck FJ
    Nat Biotechnol; 2024 Oct; 42(10):1571-1580. PubMed ID: 38168980
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Linear: a framework to enable existing software to resolve structural variants in long reads with flexible and efficient alignment-free statistical models.
    Pan C; Rahn R; Heller D; Reinert K
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36869850
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Comparison of multiple algorithms to reliably detect structural variants in pears.
    Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
    BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
    [TBL] [Abstract][Full Text] [Related]  

  • 40. GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.
    Kim JS; Senol Cali D; Xin H; Lee D; Ghose S; Alser M; Hassan H; Ergin O; Alkan C; Mutlu O
    BMC Genomics; 2018 May; 19(Suppl 2):89. PubMed ID: 29764378
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.