These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

116 related articles for article (PubMed ID: 39250520)

  • 1. All-Atom Membrane Builder via Multiscale Simulation.
    Kim S
    J Chem Inf Model; 2024 Sep; 64(18):7077-7085. PubMed ID: 39250520
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Backmapping with Mapping and Isomeric Information.
    Kim S
    J Phys Chem B; 2023 Dec; 127(49):10488-10497. PubMed ID: 38049145
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CHARMM-GUI PACE CG Builder for solution, micelle, and bilayer coarse-grained simulations.
    Qi Y; Cheng X; Han W; Jo S; Schulten K; Im W
    J Chem Inf Model; 2014 Mar; 54(3):1003-9. PubMed ID: 24624945
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Asynchronous Reciprocal Coupling of Martini 2.2 Coarse-Grained and CHARMM36 All-Atom Simulations in an Automated Multiscale Framework.
    López CA; Zhang X; Aydin F; Shrestha R; Van QN; Stanley CB; Carpenter TS; Nguyen K; Patel LA; Chen D; Burns V; Hengartner NW; Reddy TJE; Bhatia H; Di Natale F; Tran TH; Chan AH; Simanshu DK; Nissley DV; Streitz FH; Stephen AG; Turbyville TJ; Lightstone FC; Gnanakaran S; Ingólfsson HI; Neale C
    J Chem Theory Comput; 2022 Aug; 18(8):5025-5045. PubMed ID: 35866871
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Capturing the multiscale dynamics of membrane protein complexes with all-atom, mixed-resolution, and coarse-grained models.
    Liao C; Zhao X; Liu J; Schneebeli ST; Shelley JC; Li J
    Phys Chem Chem Phys; 2017 Mar; 19(13):9181-9188. PubMed ID: 28317993
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Translocation thermodynamics of linear and cyclic nonaarginine into model DPPC bilayer via coarse-grained molecular dynamics simulation: implications of pore formation and nonadditivity.
    Hu Y; Liu X; Sinha SK; Patel S
    J Phys Chem B; 2014 Mar; 118(10):2670-82. PubMed ID: 24506488
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Structure and Dynamics of Phospholipid Nanodiscs from All-Atom and Coarse-Grained Simulations.
    Debnath A; Schäfer LV
    J Phys Chem B; 2015 Jun; 119(23):6991-7002. PubMed ID: 25978497
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluating Coarse-Grained MARTINI Force-Fields for Capturing the Ripple Phase of Lipid Membranes.
    Sharma P; Desikan R; Ayappa KG
    J Phys Chem B; 2021 Jun; 125(24):6587-6599. PubMed ID: 34081861
    [TBL] [Abstract][Full Text] [Related]  

  • 9. On the application of the MARTINI coarse-grained model to immersion of a protein in a phospholipid bilayer.
    Mustafa G; Nandekar PP; Yu X; Wade RC
    J Chem Phys; 2015 Dec; 143(24):243139. PubMed ID: 26723624
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Extension of the iSoLF implicit-solvent coarse-grained model for multicomponent lipid bilayers.
    Ugarte La Torre D; Takada S; Sugita Y
    J Chem Phys; 2023 Aug; 159(7):. PubMed ID: 37581417
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Spontaneous adsorption of coiled-coil model peptides K and E to a mixed lipid bilayer.
    Pluhackova K; Wassenaar TA; Kirsch S; Böckmann RA
    J Phys Chem B; 2015 Mar; 119(12):4396-408. PubMed ID: 25719673
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Effects of Ether Linkage on Membrane Dipole Potential and Cholesterol Flip-Flop Motion in Lipid Bilayer Membranes.
    Shen H; Zhao K; Wu Z
    J Phys Chem B; 2019 Sep; 123(37):7818-7828. PubMed ID: 31453700
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The multiscale coarse-graining method. VII. Free energy decomposition of coarse-grained effective potentials.
    Lu L; Voth GA
    J Chem Phys; 2011 Jun; 134(22):224107. PubMed ID: 21682507
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular dynamics simulations of the dimerization of transmembrane alpha-helices.
    Psachoulia E; Marshall DP; Sansom MS
    Acc Chem Res; 2010 Mar; 43(3):388-96. PubMed ID: 20017540
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Backmapping from Multiresolution Coarse-Grained Models to Atomic Structures of Large Biomolecules by Restrained Molecular Dynamics Simulations Using Bayesian Inference.
    Peng J; Yuan C; Ma R; Zhang Z
    J Chem Theory Comput; 2019 May; 15(5):3344-3353. PubMed ID: 30908042
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Effect of Force Field Resolution on Membrane Mechanical Response and Mechanoporation Damage under Deformation Simulations.
    Vo ATN; Murphy MA; Phan PK; Prabhu RK; Stone TW
    Mol Biotechnol; 2024 Apr; 66(4):865-875. PubMed ID: 37016179
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes.
    Stansfeld PJ; Goose JE; Caffrey M; Carpenter EP; Parker JL; Newstead S; Sansom MS
    Structure; 2015 Jul; 23(7):1350-61. PubMed ID: 26073602
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Peptide aggregation and pore formation in a lipid bilayer: a combined coarse-grained and all atom molecular dynamics study.
    Thøgersen L; Schiøtt B; Vosegaard T; Nielsen NC; Tajkhorshid E
    Biophys J; 2008 Nov; 95(9):4337-47. PubMed ID: 18676652
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Atomic-level reconstruction of biomolecules by a rigid-fragment- and local-frame-based (RF-LF) strategy.
    Li M; Teng B; Lu W; Zhang JZ
    J Mol Model; 2020 Jan; 26(2):31. PubMed ID: 31965325
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improved prediction of bilayer and monolayer properties using a refined BMW-MARTINI force field.
    Miguel V; Perillo MA; Villarreal MA
    Biochim Biophys Acta; 2016 Nov; 1858(11):2903-2910. PubMed ID: 27591685
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.