These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

218 related articles for article (PubMed ID: 39266450)

  • 1. Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities.
    Gnimpieba EZ; Hartman TW; Do T; Zylla J; Aryal S; Haas SJ; Agany DDM; Gurung BDS; Doe V; Yosufzai Z; Pan D; Campbell R; Huber VC; Sani R; Gadhamshetty V; Lushbough C
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39266450
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Transcriptomics and epigenetic data integration learning module on Google Cloud.
    Ruprecht NA; Kennedy JD; Bansal B; Singhal S; Sens D; Maggio A; Doe V; Hawkins D; Campbel R; O'Connell K; Gill JS; Schaefer K; Singhal SK
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39101486
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Whole-genome bisulfite sequencing data analysis learning module on Google Cloud Platform.
    Qin Y; Maggio A; Hawkins D; Beaudry L; Kim A; Pan D; Gong T; Fu Y; Yang H; Deng Y
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39041913
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A cloud-based learning module for biomarker discovery.
    Hemme CL; Beaudry L; Yosufzai Z; Kim A; Pan D; Campbell R; Price M; Cho BP
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39041912
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Understanding proteome quantification in an interactive learning module on Google Cloud Platform.
    O'Connell KA; Kopchick B; Carlson T; Belardo D; Byrum SD
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39041914
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Cloud-based introduction to BASH programming for biologists.
    Wilkins OM; Campbell R; Yosufzai Z; Doe V; Soucy SM
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39041911
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CCPA: cloud-based, self-learning modules for consensus pathway analysis using GO, KEGG and Reactome.
    Nguyen H; Pham VD; Nguyen H; Tran B; Petereit J; Nguyen T
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39041916
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Reusable tutorials for using cloud-based computing environments for the analysis of bacterial gene expression data from bulk RNA sequencing.
    Allers S; O'Connell KA; Carlson T; Belardo D; King BL
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38997128
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identifying and training deep learning neural networks on biomedical-related datasets.
    Woessner AE; Anjum U; Salman H; Lear J; Turner JT; Campbell R; Beaudry L; Zhan J; Cornett LE; Gauch S; Quinn KP
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39041915
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CloudATAC: a cloud-based framework for ATAC-Seq data analysis.
    Veerappa AM; Rowley MJ; Maggio A; Beaudry L; Hawkins D; Kim A; Sethi S; Sorgen PL; Guda C
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39041910
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A cloud-based training module for efficient de novo transcriptome assembly using Nextflow and Google cloud.
    Seaman RP; Campbell R; Doe V; Yosufzai Z; Graber JH
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38941113
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using a decision tree to predict the number of COVID cases: a tutorial for beginners.
    Moctezuma L; Rivera LB; van Nouhuijs F; Orcales F; Kim A; Campbell R; Fuse M; Pennings PS
    bioRxiv; 2024 May; ():. PubMed ID: 38187735
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis.
    Weber N; Liou D; Dommer J; MacMenamin P; QuiƱones M; Misner I; Oler AJ; Wan J; Kim L; Coakley McCarthy M; Ezeji S; Noble K; Hurt DE
    Bioinformatics; 2018 Apr; 34(8):1411-1413. PubMed ID: 29028892
    [TBL] [Abstract][Full Text] [Related]  

  • 14. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks.
    Zhou Z; Tran PQ; Breister AM; Liu Y; Kieft K; Cowley ES; Karaoz U; Anantharaman K
    Microbiome; 2022 Feb; 10(1):33. PubMed ID: 35172890
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis.
    Ru J; Khan Mirzaei M; Xue J; Peng X; Deng L
    Gut Microbes; 2023; 15(1):2192522. PubMed ID: 36998174
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs.
    Brown SM; Chen H; Hao Y; Laungani BP; Ali TA; Dong C; Lijeron C; Kim B; Wultsch C; Pei Z; Krampis K
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30942867
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MetaPhage: an Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data.
    Pandolfo M; Telatin A; Lazzari G; Adriaenssens EM; Vitulo N
    mSystems; 2022 Oct; 7(5):e0074122. PubMed ID: 36069454
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MetaTopics: an integration tool to analyze microbial community profile by topic model.
    Yan J; Chuai G; Qi T; Shao F; Zhou C; Zhu C; Yang J; Yu Y; Shi C; Kang N; He Y; Liu Q
    BMC Genomics; 2017 Jan; 18(Suppl 1):962. PubMed ID: 28198670
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 20. IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
    Kalantar KL; Carvalho T; de Bourcy CFA; Dimitrov B; Dingle G; Egger R; Han J; Holmes OB; Juan YF; King R; Kislyuk A; Lin MF; Mariano M; Morse T; Reynoso LV; Cruz DR; Sheu J; Tang J; Wang J; Zhang MA; Zhong E; Ahyong V; Lay S; Chea S; Bohl JA; Manning JE; Tato CM; DeRisi JL
    Gigascience; 2020 Oct; 9(10):. PubMed ID: 33057676
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.