These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

131 related articles for article (PubMed ID: 39266944)

  • 1. Optimizing next-generation sequencing efficiency in clinical settings: analysis of read length impact on cost and performance.
    Meirelles PM; Viana PAB; Tschoeke DA; de Moraes L; Santos LA; Barral-Netto M; Khouri R; Ramos PIP
    BMC Genomics; 2024 Sep; 25(1):856. PubMed ID: 39266944
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients.
    Mostafa HH; Fissel JA; Fanelli B; Bergman Y; Gniazdowski V; Dadlani M; Carroll KC; Colwell RR; Simner PJ
    mBio; 2020 Nov; 11(6):. PubMed ID: 33219095
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The impact of read length on quantification of differentially expressed genes and splice junction detection.
    Chhangawala S; Rudy G; Mason CE; Rosenfeld JA
    Genome Biol; 2015 Jun; 16(1):131. PubMed ID: 26100517
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Optimized Sequencing Adaptors Enable Rapid and Real-Time Metagenomic Identification of Pathogens during Runtime of Sequencing.
    Zhang D; Zhang J; Du J; Zhou Y; Wu P; Liu Z; Sun Z; Wang J; Ding W; Chen J; Wang J; Xu Y; Ouyang C; Yang Q
    Clin Chem; 2022 Jun; 68(6):826-836. PubMed ID: 35290433
    [TBL] [Abstract][Full Text] [Related]  

  • 6. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.
    Santos JD; Sobral D; Pinheiro M; Isidro J; Bogaardt C; Pinto M; Eusébio R; Santos A; Mamede R; Horton DL; Gomes JP; ; Borges V
    Genome Med; 2024 Apr; 16(1):61. PubMed ID: 38659008
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses.
    Buddle S; Forrest L; Akinsuyi N; Martin Bernal LM; Brooks T; Venturini C; Miller C; Brown JR; Storey N; Atkinson L; Best T; Roy S; Goldsworthy S; Castellano S; Simmonds P; Harvala H; Golubchik T; Williams R; Breuer J; Morfopoulou S; Torres Montaguth OE
    Genome Med; 2024 Sep; 16(1):111. PubMed ID: 39252069
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.
    Pan W; Chen B; Xu Y
    Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The effects of sequencing strategies on Metagenomic pathogen detection using bronchoalveolar lavage fluid samples.
    Li Z; Guo Z; Wu W; Tan L; Long Q; Xia H; Hu M
    Heliyon; 2024 Jul; 10(13):e33429. PubMed ID: 39027502
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
    Chen Z; Grim CJ; Ramachandran P; Meng J
    Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Generation and application of pseudo-long reads for metagenome assembly.
    Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
    Gigascience; 2022 May; 11():. PubMed ID: 35579554
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing.
    Rawat A; Engelthaler DM; Driebe EM; Keim P; Foster JT
    PLoS One; 2014; 9(11):e110915. PubMed ID: 25365329
    [TBL] [Abstract][Full Text] [Related]  

  • 14. IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
    Kalantar KL; Carvalho T; de Bourcy CFA; Dimitrov B; Dingle G; Egger R; Han J; Holmes OB; Juan YF; King R; Kislyuk A; Lin MF; Mariano M; Morse T; Reynoso LV; Cruz DR; Sheu J; Tang J; Wang J; Zhang MA; Zhong E; Ahyong V; Lay S; Chea S; Bohl JA; Manning JE; Tato CM; DeRisi JL
    Gigascience; 2020 Oct; 9(10):. PubMed ID: 33057676
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Snipe: highly sensitive pathogen detection from metagenomic sequencing data.
    Huang L; Hong B; Yang W; Wang L; Yu R
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33822895
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Rapid screening and identification of viral pathogens in metagenomic data.
    Song S; Ma L; Xu X; Shi H; Li X; Liu Y; Hao P
    BMC Med Genomics; 2021 Dec; 14(Suppl 6):289. PubMed ID: 34903237
    [TBL] [Abstract][Full Text] [Related]  

  • 17. 16SPIP: a comprehensive analysis pipeline for rapid pathogen detection in clinical samples based on 16S metagenomic sequencing.
    Miao J; Han N; Qiang Y; Zhang T; Li X; Zhang W
    BMC Bioinformatics; 2017 Dec; 18(Suppl 16):568. PubMed ID: 29297318
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes.
    Treiber ML; Taft DH; Korf I; Mills DA; Lemay DG
    BMC Bioinformatics; 2020 Feb; 21(1):74. PubMed ID: 32093654
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples.
    Andrusch A; Dabrowski PW; Klenner J; Tausch SH; Kohl C; Osman AA; Renard BY; Nitsche A
    Bioinformatics; 2018 Sep; 34(17):i715-i721. PubMed ID: 30423069
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.