These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 39271703)

  • 1. Simultaneous profiling of RNA isoforms and chromatin accessibility of single cells of human retinal organoids.
    Zhang S; Xiao Y; Mo X; Chen X; Zhong J; Chen Z; Liu X; Qiu Y; Dai W; Chen J; Jin X; Fan G; Hu Y
    Nat Commun; 2024 Sep; 15(1):8022. PubMed ID: 39271703
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility using scRNA-Seq and scATAC-Seq.
    Weir K; Leavey P; Santiago C; Blackshaw S
    J Vis Exp; 2021 Mar; (169):. PubMed ID: 33779599
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Single-cell analyses reveal transient retinal progenitor cells in the ciliary margin of developing human retina.
    Dorgau B; Collin J; Rozanska A; Zerti D; Unsworth A; Crosier M; Hussain R; Coxhead J; Dhanaseelan T; Patel A; Sowden JC; FitzPatrick DR; Queen R; Lako M
    Nat Commun; 2024 Apr; 15(1):3567. PubMed ID: 38670973
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Using BRIE to Detect and Analyze Splicing Isoforms in scRNA-Seq Data.
    Huang Y; Sanguinetti G
    Methods Mol Biol; 2019; 1935():175-185. PubMed ID: 30758827
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Single-cell ATAC-seq of fetal human retina and stem-cell-derived retinal organoids shows changing chromatin landscapes during cell fate acquisition.
    Finkbeiner C; Ortuño-Lizarán I; Sridhar A; Hooper M; Petter S; Reh TA
    Cell Rep; 2022 Jan; 38(4):110294. PubMed ID: 35081356
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Understanding the complexity of retina and pluripotent stem cell derived retinal organoids with single cell RNA sequencing: current progress, remaining challenges and future prospective.
    Zerti D; Collin J; Queen R; Cockell SJ; Lako M
    Curr Eye Res; 2020 Mar; 45(3):385-396. PubMed ID: 31794277
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.
    Kim S; Lowe A; Dharmat R; Lee S; Owen LA; Wang J; Shakoor A; Li Y; Morgan DJ; Hejazi AA; Cvekl A; DeAngelis MM; Zhou ZJ; Chen R; Liu W
    Proc Natl Acad Sci U S A; 2019 May; 116(22):10824-10833. PubMed ID: 31072937
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Chromatin Accessibility and Transcriptional Differences in Human Stem Cell-Derived Early-Stage Retinal Organoids.
    Jones MK; Agarwal D; Mazo KW; Chopra M; Jurlina SL; Dash N; Xu Q; Ogata AR; Chow M; Hill AD; Kambli NK; Xu G; Sasik R; Birmingham A; Fisch KM; Weinreb RN; Enke RA; Skowronska-Krawczyk D; Wahlin KJ
    Cells; 2022 Oct; 11(21):. PubMed ID: 36359808
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Coverage-dependent bias creates the appearance of binary splicing in single cells.
    Buen Abad Najar CF; Yosef N; Lareau LF
    Elife; 2020 Jun; 9():. PubMed ID: 32597758
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis.
    Granja JM; Corces MR; Pierce SE; Bagdatli ST; Choudhry H; Chang HY; Greenleaf WJ
    Nat Genet; 2021 Mar; 53(3):403-411. PubMed ID: 33633365
    [TBL] [Abstract][Full Text] [Related]  

  • 11. IsoCell: An Approach to Enhance Single Cell Clustering by Integrating Isoform-Level Expression Through Orthogonal Projection.
    Liu Y; Li HD; Xu Y; Liu YW; Peng X; Wang J
    IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(1):465-475. PubMed ID: 35100120
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Longitudinal single-cell RNA-seq of hESCs-derived retinal organoids.
    Wang S; Poli S; Liang X; Peng GH
    Sci China Life Sci; 2021 Oct; 64(10):1661-1676. PubMed ID: 33521856
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Single-Cell RNA Sequencing of hESC-Derived 3D Retinal Organoids Reveals Novel Genes Regulating RPC Commitment in Early Human Retinogenesis.
    Mao X; An Q; Xi H; Yang XJ; Zhang X; Yuan S; Wang J; Hu Y; Liu Q; Fan G
    Stem Cell Reports; 2019 Oct; 13(4):747-760. PubMed ID: 31543471
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NSMAP: a method for spliced isoforms identification and quantification from RNA-Seq.
    Xia Z; Wen J; Chang CC; Zhou X
    BMC Bioinformatics; 2011 May; 12():162. PubMed ID: 21575225
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protocol for scChaRM-seq: Simultaneous profiling of gene expression, DNA methylation, and chromatin accessibility in single cells.
    Yan R; Cheng X; Guo F
    STAR Protoc; 2021 Dec; 2(4):100972. PubMed ID: 34849489
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells.
    Kole C; Berdugo N; Da Silva C; Aït-Ali N; Millet-Puel G; Pagan D; Blond F; Poidevin L; Ripp R; Fontaine V; Wincker P; Zack DJ; Sahel JA; Poch O; Léveillard T
    PLoS One; 2016; 11(3):e0150758. PubMed ID: 26985665
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution.
    Cowan CS; Renner M; De Gennaro M; Gross-Scherf B; Goldblum D; Hou Y; Munz M; Rodrigues TM; Krol J; Szikra T; Cuttat R; Waldt A; Papasaikas P; Diggelmann R; Patino-Alvarez CP; Galliker P; Spirig SE; Pavlinic D; Gerber-Hollbach N; Schuierer S; Srdanovic A; Balogh M; Panero R; Kusnyerik A; Szabo A; Stadler MB; Orgül S; Picelli S; Hasler PW; Hierlemann A; Scholl HPN; Roma G; Nigsch F; Roska B
    Cell; 2020 Sep; 182(6):1623-1640.e34. PubMed ID: 32946783
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures.
    Sridhar A; Hoshino A; Finkbeiner CR; Chitsazan A; Dai L; Haugan AK; Eschenbacher KM; Jackson DL; Trapnell C; Bermingham-McDonogh O; Glass I; Reh TA
    Cell Rep; 2020 Feb; 30(5):1644-1659.e4. PubMed ID: 32023475
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq.
    Zhou W; Ji Z; Fang W; Ji H
    Nucleic Acids Res; 2019 Nov; 47(19):e121. PubMed ID: 31428792
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Cell-specific cis-regulatory elements and mechanisms of non-coding genetic disease in human retina and retinal organoids.
    Thomas ED; Timms AE; Giles S; Harkins-Perry S; Lyu P; Hoang T; Qian J; Jackson VE; Bahlo M; Blackshaw S; Friedlander M; Eade K; Cherry TJ
    Dev Cell; 2022 Mar; 57(6):820-836.e6. PubMed ID: 35303433
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.